Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,611,991 – 6,612,102 |
Length | 111 |
Max. P | 0.929830 |
Location | 6,611,991 – 6,612,102 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.17 |
Mean single sequence MFE | -28.24 |
Consensus MFE | -22.00 |
Energy contribution | -21.76 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -2.13 |
Structure conservation index | 0.78 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6611991 111 + 27905053 UAAGCAGUGUCGCA-UCAAAGAACAAGCCGGCCAAGGCCGUAUUUUCUGUAGGAAUUCCUAUGUCGAUUGCGAUCCAAGUAAAUUUACUUCAGAUGACAAUAUAAAUCUUUC ......(..(((((-((..((((.((..((((....))))..))))))(((((....)))))...)).)))))..)(((((....))))).((((..........))))... ( -25.90) >DroSec_CAF1 5290 111 + 1 UAAGCAGUGUCGCA-UCAAAGAACAAGCCGGCCAAGGCCGCAUUUUCUGUAGGAAUUCCUAUGUCGAUUGCUAUCCAAGUAAAUUUACUUAAGAUGACAAUAUAAAUCUUUC .......(((((((-((..((((...((.(((....)))))...))))(((((....)))))...)).))).(((.(((((....)))))..)))))))............. ( -24.60) >DroSim_CAF1 5293 110 + 1 UAAGCAGUGUCGCA-UCAAAGAACAAGC-GGCCAUGGCCGCAUUUUCUGUAGGAAUUCCUAUGUCGAUUGCGAUCCAAGUAAAUUUACUUCAGAUGACAAUAUAAAUCUUUC ......(..(((((-((..((((...((-(((....)))))...))))(((((....)))))...)).)))))..)(((((....))))).((((..........))))... ( -29.30) >DroEre_CAF1 5310 112 + 1 UAAGCAGUGUCGCAAUCGAAAAACAAGGUGGCUUAGGCCGACUUAUUAAUAGGAUGUCCUAUGUUGAUUGCGAUGUAAGUAAAUUUACUUCAGAUGACAAUAUAAAUCUUUC .......((((((((((((.....(((.((((....)))).)))....(((((....))))).))))))))((.(((((....))))).))....))))............. ( -29.30) >DroYak_CAF1 5342 112 + 1 UAAGCAGUGUCGCAAUCGAAGAAGAAGCUGGCUUAGGCCGACUUUUAUAUAGGAUGUCCUAUGUUGAUUGCGAUGUAAGUAAAUUUACUUCAGAUGACAAUAUAAAUCUUUC .......((((((((((((...(((((.((((....)))).))))).((((((....))))))))))))))((.(((((....))))).))....))))............. ( -32.10) >consensus UAAGCAGUGUCGCA_UCAAAGAACAAGCCGGCCAAGGCCGAAUUUUCUGUAGGAAUUCCUAUGUCGAUUGCGAUCCAAGUAAAUUUACUUCAGAUGACAAUAUAAAUCUUUC ......(..(((((.((...........((((....))))........(((((....)))))...)).)))))..)(((((....))))).((((..........))))... (-22.00 = -21.76 + -0.24)
Location | 6,611,991 – 6,612,102 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 89.17 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -20.32 |
Energy contribution | -20.48 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.39 |
Structure conservation index | 0.71 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6611991 111 - 27905053 GAAAGAUUUAUAUUGUCAUCUGAAGUAAAUUUACUUGGAUCGCAAUCGACAUAGGAAUUCCUACAGAAAAUACGGCCUUGGCCGGCUUGUUCUUUGA-UGCGACACUGCUUA .............((((((((.(((((....))))))))).(((.((((..((((....)))).((((....((((....)))).....))))))))-)))))))....... ( -27.50) >DroSec_CAF1 5290 111 - 1 GAAAGAUUUAUAUUGUCAUCUUAAGUAAAUUUACUUGGAUAGCAAUCGACAUAGGAAUUCCUACAGAAAAUGCGGCCUUGGCCGGCUUGUUCUUUGA-UGCGACACUGCUUA .............((((((((.(((((....))))))))).(((.((((..((((....)))).((((...(((((....))).))...))))))))-)))))))....... ( -28.10) >DroSim_CAF1 5293 110 - 1 GAAAGAUUUAUAUUGUCAUCUGAAGUAAAUUUACUUGGAUCGCAAUCGACAUAGGAAUUCCUACAGAAAAUGCGGCCAUGGCC-GCUUGUUCUUUGA-UGCGACACUGCUUA .............((((((((.(((((....))))))))).(((.((((..((((....)))).((((...(((((....)))-))...))))))))-)))))))....... ( -31.40) >DroEre_CAF1 5310 112 - 1 GAAAGAUUUAUAUUGUCAUCUGAAGUAAAUUUACUUACAUCGCAAUCAACAUAGGACAUCCUAUUAAUAAGUCGGCCUAAGCCACCUUGUUUUUCGAUUGCGACACUGCUUA .............((((....((.((((......)))).))((((((...(((((....))))).((((((..(((....)))..))))))....))))))))))....... ( -28.00) >DroYak_CAF1 5342 112 - 1 GAAAGAUUUAUAUUGUCAUCUGAAGUAAAUUUACUUACAUCGCAAUCAACAUAGGACAUCCUAUAUAAAAGUCGGCCUAAGCCAGCUUCUUCUUCGAUUGCGACACUGCUUA .............((((....((.((((......)))).))((((((...(((((....)))))....((((.(((....))).)))).......))))))))))....... ( -27.30) >consensus GAAAGAUUUAUAUUGUCAUCUGAAGUAAAUUUACUUGGAUCGCAAUCGACAUAGGAAUUCCUACAGAAAAUGCGGCCUUGGCCAGCUUGUUCUUUGA_UGCGACACUGCUUA .............((((((((.(((((....))))))))).(((.((....((((....))))..........(((....)))............)).)))))))....... (-20.32 = -20.48 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:36 2006