Locus 2321

Sequence ID 3R_DroMel_CAF1
Location 6,609,691 – 6,609,789
Length 98
Max. P 0.740308
window3756

overview

Window 6

Location 6,609,691 – 6,609,789
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 90.31
Mean single sequence MFE -32.48
Consensus MFE -26.85
Energy contribution -26.97
Covariance contribution 0.11
Combinations/Pair 1.20
Mean z-score -2.11
Structure conservation index 0.83
SVM decision value 0.45
SVM RNA-class probability 0.740308
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6609691 98 + 27905053
AGCCGAUGUGCUGGGCACAGAGAGUGUUCGUCAGCCUCAUUUAAGUUAGGAUUU-GCUUAUGUUUUCGUUCAAUGAAAUGAAGCCCGGCGGACUGGUUA
(((((.(.((((((((...(((((..(..((...(((.((....)).)))....-))..)..))))).((((......)))))))))))).).))))). ( -31.10)
>DroSec_CAF1 3048 98 + 1
AUCCGAUGUGCUGGGCACAGAGGGUGUUCGUAAGCCUCAUUUCAGUUAGGAUUU-GCUAAUGUUUUCGUUCAAUGAAAUGGAGCCCGGCGGACUGGUUA
((((..(((((...)))))..))))((((((..((..(((((((...(.((...-((....))..)).)....)))))))..))...))))))...... ( -32.00)
>DroSim_CAF1 3049 98 + 1
AGCCGAUGUGCUGGGCACAGAGGGUGUUCGUAAGCCUCAUUUCAGUUAGGAUUU-GCUAAUGUUUUCGUUCAAUGAAAUGGAGCCCGGCGGACUGGUUA
(((((.(.((((((((...(((((..((.((((((((.((....)).))).)))-)).))..))))).((((......)))))))))))).).))))). ( -34.20)
>DroEre_CAF1 3025 96 + 1
AGCCGAUGUGCUGGGCACAGAGGGUGUUCGUCAACCUCAUUUCAGUGAGGAUUU-GCUU--GUUUUCGUUGAAUGAAAUAGAAUCCGGCGGACUGGUUA
(((((.(.(((((((....((((.((.....)).))))..((((((((((((..-....--))))))))))))..........))))))).).))))). ( -30.10)
>DroYak_CAF1 3041 98 + 1
AGCCGAUGUGCUGGGCACAGAGGGUGUUUGUCAGCCUCAUUUCAGUGAGGAUUU-GCUUAUGUUUUCGUUUAAUGAAAUGAAGCCCGGCGGACUGGUUA
(((((.(.((((((((...((((.((.....)).))))((((((..((.((...-((....))..)).))...))))))...)))))))).).))))). ( -38.30)
>DroAna_CAF1 3009 98 + 1
AGCCAAUGUGCUGGGCACACAAAGUAUUCGUCAGCCUCAUUUCAGUUAAGAUUUAGCUAAUGUUUUUGUU-AAAGAAGUGGAGCCCGGCGGACUGGUUA
(((((.(.((((((((((.....))...........(((((((..((((.(...(((....)))..).))-)).))))))).)))))))).).))))). ( -29.20)
>consensus
AGCCGAUGUGCUGGGCACAGAGGGUGUUCGUCAGCCUCAUUUCAGUUAGGAUUU_GCUAAUGUUUUCGUUCAAUGAAAUGGAGCCCGGCGGACUGGUUA
(((((.(.((((((((......(((........)))((((((((....(((....((....)).)))......)))))))).)))))))).).))))). (-26.85 = -26.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:34 2006