Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,605,201 – 6,605,294 |
Length | 93 |
Max. P | 0.999593 |
Location | 6,605,201 – 6,605,294 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -22.88 |
Energy contribution | -23.38 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.61 |
Structure conservation index | 0.85 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6605201 93 + 27905053 AUCCGCACGCUGCUUGACAUUUUGUAAUUUGAACAAAUUGCUUGCAUUUUUA-GGCAACUCCUAUAAAUAGUGGAGUUGCUGCUGCUGGAAAUA .((((((.(((((..(.((.(((((.......))))).)))..)))......-(((((((((..........)))))))))))))).))).... ( -30.50) >DroSec_CAF1 10118 93 + 1 AUCCGCACGCUGCUUGACAUUUUGUAAUUUGAACAAAUUGCUCGCAUUUUUG-GGCAACUCCUAUAAAUAGUGGAGUUGCUGUCGCUGGAAAUA .(((((((..(((..(.((.(((((.......))))).)))..)))......-(((((((((..........))))))))))).)).))).... ( -26.90) >DroSim_CAF1 12090 93 + 1 AUCCGCACGCUGCUUGACAUUUUGUAAUUUGAACAAAUUGCUCGCAUUUUUG-GGCAACUCCUAUAAAUAAUGGAGUUGCUGUCGCUGGAAAUA .(((((((..(((..(.((.(((((.......))))).)))..)))......-(((((((((..........))))))))))).)).))).... ( -26.90) >DroEre_CAF1 10364 94 + 1 AUCCGCACGUUGCUUGACAUUUUGUAAUUUGAACAAAUUGCACGCAUUUUUGGGGCAACUCCUAUAAAUAGUGGAGUUGCUGCCGCUGGAAAUA .(((((....(((.((.((.(((((.......))))).)))).))).....(((((((((((..........))))))))).)))).))).... ( -30.40) >DroYak_CAF1 10363 93 + 1 AUCCGCACGUUGCUUGACAUUUUGUAAUUUGAACAAAUUGCUCGCAUUUUUG-GGCAACUCCUAUAAAUAGUGGAGUUGCUGCCGCUGGAAAUA .(((((....(((..(.((.(((((.......))))).)))..)))......-(((((((((..........)))))))))...)).))).... ( -26.80) >DroAna_CAF1 15133 92 + 1 AUCUGCACACUGCCUGACAUUUUGUAAUUUG-ACAAAUUGCUUGAAUUUUUG-GGCAACUCCUAUAAAUAGUGGAGUUACUGCCGCUCGAAAAG .((.((.....(((..(.((((.((((((..-...))))))..))))..)..-)))((((((..........))))))......))..)).... ( -19.60) >consensus AUCCGCACGCUGCUUGACAUUUUGUAAUUUGAACAAAUUGCUCGCAUUUUUG_GGCAACUCCUAUAAAUAGUGGAGUUGCUGCCGCUGGAAAUA .(((((....(((..(.((.(((((.......))))).)))..))).......(((((((((..........)))))))))...)).))).... (-22.88 = -23.38 + 0.50)
Location | 6,605,201 – 6,605,294 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -23.59 |
Energy contribution | -23.57 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -3.06 |
Structure conservation index | 0.91 |
SVM decision value | 3.76 |
SVM RNA-class probability | 0.999593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6605201 93 - 27905053 UAUUUCCAGCAGCAGCAACUCCACUAUUUAUAGGAGUUGCC-UAAAAAUGCAAGCAAUUUGUUCAAAUUACAAAAUGUCAAGCAGCGUGCGGAU ....(((.(((((.((((((((..........)))))))).-......(((..(((.(((((.......))))).)))...))))).)))))). ( -28.50) >DroSec_CAF1 10118 93 - 1 UAUUUCCAGCGACAGCAACUCCACUAUUUAUAGGAGUUGCC-CAAAAAUGCGAGCAAUUUGUUCAAAUUACAAAAUGUCAAGCAGCGUGCGGAU ....(((.(((.(.((((((((..........)))))))).-......(((..(((.(((((.......))))).)))...)))))))..))). ( -26.90) >DroSim_CAF1 12090 93 - 1 UAUUUCCAGCGACAGCAACUCCAUUAUUUAUAGGAGUUGCC-CAAAAAUGCGAGCAAUUUGUUCAAAUUACAAAAUGUCAAGCAGCGUGCGGAU ....(((.(((.(.((((((((..........)))))))).-......(((..(((.(((((.......))))).)))...)))))))..))). ( -26.90) >DroEre_CAF1 10364 94 - 1 UAUUUCCAGCGGCAGCAACUCCACUAUUUAUAGGAGUUGCCCCAAAAAUGCGUGCAAUUUGUUCAAAUUACAAAAUGUCAAGCAACGUGCGGAU ....(((.((((..((((((((..........)))))))).)).....(((.((((.(((((.......))))).)).)).)))....))))). ( -27.70) >DroYak_CAF1 10363 93 - 1 UAUUUCCAGCGGCAGCAACUCCACUAUUUAUAGGAGUUGCC-CAAAAAUGCGAGCAAUUUGUUCAAAUUACAAAAUGUCAAGCAACGUGCGGAU ....(((.(((...((((((((..........)))))))).-......(((..(((.(((((.......))))).)))...))).)))..))). ( -27.20) >DroAna_CAF1 15133 92 - 1 CUUUUCGAGCGGCAGUAACUCCACUAUUUAUAGGAGUUGCC-CAAAAAUUCAAGCAAUUUGU-CAAAUUACAAAAUGUCAGGCAGUGUGCAGAU ..........((..((((((((..........)))))))))-)..........(((..((((-(..((........))..)))))..))).... ( -18.80) >consensus UAUUUCCAGCGGCAGCAACUCCACUAUUUAUAGGAGUUGCC_CAAAAAUGCGAGCAAUUUGUUCAAAUUACAAAAUGUCAAGCAGCGUGCGGAU ....(((.((.((.((((((((..........))))))))........(((..(((.(((((.......))))).)))...)))..))))))). (-23.59 = -23.57 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:33 2006