Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 924,837 – 924,936 |
Length | 99 |
Max. P | 0.926037 |
Location | 924,837 – 924,936 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 86.51 |
Mean single sequence MFE | -38.59 |
Consensus MFE | -31.68 |
Energy contribution | -31.77 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.21 |
Mean z-score | -2.86 |
Structure conservation index | 0.82 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 924837 99 + 27905053 GCCCACCUAUUAGUUCGGCCAGAGCUAGUUGUUCAUUAAAGUCCUGGCCAACGCCCCUUUUGGGCUGAUUUGGGUGGCAAAUGGCACGUGCCAUAAAUU (((.(((((...(((.((((((..((.............))..)))))))))((((.....)))).....))))))))..(((((....)))))..... ( -39.62) >DroSec_CAF1 13832 98 + 1 GCCCACCUAUUAGUUCGGCCAGAGCUAGUUGUUCAUUAAAGUCGUGGCCAACGCCCCU-UUGGGCGGAUUUGGGUGGCAACUGGCACGUGCCAUAAAUU (((.(((((..((((((.((((((...((((..(((.......)))..))))....))-)))).))))))))))))))...((((....))))...... ( -38.20) >DroSim_CAF1 19732 98 + 1 GCCCACCUAUUAGUUCGGCCAGAGCUAGUUGUUCAUUAAAGUCGUGGCCAACGCCCCU-UCGGGCGGAUUUGGGUGGCAACUGGCACGUGCCAUAAAUU (((.(((((..((((((((((..(((.............)))..)))))...((((..-..)))))))))))))))))...((((....))))...... ( -37.02) >DroEre_CAF1 14927 98 + 1 GCCCACCUAUUACUUCGGCCGGGGCUAGUUGCUCAUUAAAGUCCUGGCCAACGCCCCU-UUGGGCGGACUUGGGUGGCAACUGGCACGUGCCGUAAAUU ...............((((((..(((((((((.(((..((((((.(.....)((((..-..))))))))))..)))))))))))).)).))))...... ( -44.30) >DroYak_CAF1 34481 98 + 1 GCCCACCUAUUACUUAGGCCAGAGCUAGUUGCUCAUUAAAGUCCUGGCCAACGCCCCU-UGGGGCGGACUUGGAUGGCAACUGGCACGUGCCAUAAAUU ................(((..(.(((((((((.((((.((((((.(.....)((((..-..)))))))))).))))))))))))).)..)))....... ( -42.00) >DroAna_CAF1 12367 97 + 1 UCAGGCCUAAUUCCACGCCCGUCGCUAGUUGUUCAUUAAAGCCUCGGCCGACGCCCCU-UCAGGCGUUUGUGGGCGGU-CCUGGCACGUGCCAUAAAUU ...((((....((((((.(((..(((.............)))..))).)((((((...-...)))))).))))).)))-).((((....))))...... ( -30.42) >consensus GCCCACCUAUUACUUCGGCCAGAGCUAGUUGUUCAUUAAAGUCCUGGCCAACGCCCCU_UUGGGCGGAUUUGGGUGGCAACUGGCACGUGCCAUAAAUU ..(((((((.......(((((..(((.............)))..)))))..(((((.....)))))....)))))))....((((....))))...... (-31.68 = -31.77 + 0.09)
Location | 924,837 – 924,936 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 86.51 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -27.11 |
Energy contribution | -27.62 |
Covariance contribution | 0.51 |
Combinations/Pair | 1.25 |
Mean z-score | -2.23 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 924837 99 - 27905053 AAUUUAUGGCACGUGCCAUUUGCCACCCAAAUCAGCCCAAAAGGGGCGUUGGCCAGGACUUUAAUGAACAACUAGCUCUGGCCGAACUAAUAGGUGGGC .....(((((....)))))...(((((.......((((.....)))).((((((((..((.............))..)))))))).......))))).. ( -37.42) >DroSec_CAF1 13832 98 - 1 AAUUUAUGGCACGUGCCAGUUGCCACCCAAAUCCGCCCAA-AGGGGCGUUGGCCACGACUUUAAUGAACAACUAGCUCUGGCCGAACUAAUAGGUGGGC ......((((....))))....(((((......(((((..-..)))))(((((((.((((.............)).))))))))).......))))).. ( -34.02) >DroSim_CAF1 19732 98 - 1 AAUUUAUGGCACGUGCCAGUUGCCACCCAAAUCCGCCCGA-AGGGGCGUUGGCCACGACUUUAAUGAACAACUAGCUCUGGCCGAACUAAUAGGUGGGC ......((((....))))....(((((......(((((..-..)))))(((((((.((((.............)).))))))))).......))))).. ( -36.72) >DroEre_CAF1 14927 98 - 1 AAUUUACGGCACGUGCCAGUUGCCACCCAAGUCCGCCCAA-AGGGGCGUUGGCCAGGACUUUAAUGAGCAACUAGCCCCGGCCGAAGUAAUAGGUGGGC .......(((....)))((((((((...((((((((((..-..))))(....)..))))))...)).)))))).((((..(((.........))))))) ( -36.50) >DroYak_CAF1 34481 98 - 1 AAUUUAUGGCACGUGCCAGUUGCCAUCCAAGUCCGCCCCA-AGGGGCGUUGGCCAGGACUUUAAUGAGCAACUAGCUCUGGCCUAAGUAAUAGGUGGGC .......(((....)))(((((((((..((((((((((..-..))))(....)..))))))..))).)))))).((((..(((((.....))))))))) ( -39.20) >DroAna_CAF1 12367 97 - 1 AAUUUAUGGCACGUGCCAGG-ACCGCCCACAAACGCCUGA-AGGGGCGUCGGCCGAGGCUUUAAUGAACAACUAGCGACGGGCGUGGAAUUAGGCCUGA .......(((....)))(((-.((..((((..((((((..-..)))))).(.(((..(((.............)))..))).))))).....))))).. ( -32.02) >consensus AAUUUAUGGCACGUGCCAGUUGCCACCCAAAUCCGCCCAA_AGGGGCGUUGGCCAGGACUUUAAUGAACAACUAGCUCUGGCCGAACUAAUAGGUGGGC ......((((....))))....(((((......(((((.....)))))(((((((.(.((.............)).).))))))).......))))).. (-27.11 = -27.62 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:19 2006