Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,602,299 – 6,602,397 |
Length | 98 |
Max. P | 0.686554 |
Location | 6,602,299 – 6,602,397 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -17.73 |
Consensus MFE | -9.56 |
Energy contribution | -10.62 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.78 |
Structure conservation index | 0.54 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6602299 98 - 27905053 GUGUAGUAAUUCAUACAUAAGCCUAUUUCUAACAAUUUAAUAACUCUCACACAAUGGUUGUGGUGUACUCGUACUACACUGAAUACUACAUAUGUAUA ((((((((.....(((((.((((................................))))...)))))....))))))))...((((.......)))). ( -18.35) >DroSec_CAF1 7376 82 - 1 GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUCAAUAACUCGCACACAAUGGUUGUG-UGU-----------ACUGAAUACUACAUA----UA ((((((((.((((((((((((((................................)))).))-)))-----------).)))))))))))).----.. ( -18.55) >DroSim_CAF1 8406 82 - 1 GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUUAAUAACUCGCACACAAUGGUUGUG-UGU-----------ACUGAAUACUACAUA----UA ((((((((.((((((((((((((................................)))).))-)))-----------).)))))))))))).----.. ( -18.55) >DroEre_CAF1 7453 89 - 1 GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUUAAUAACUCUCACACAAUGGUUGUA-UGUAAGCGUACUAUACUGAAUACUA--------UG ((((((((...(.((((((((((................................)))).))-)))).)..)))))))).........--------.. ( -15.45) >consensus GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUUAAUAACUCGCACACAAUGGUUGUG_UGU___________ACUGAAUACUACAUA____UA ((((((((.((((((((..((((................................))))....))))............))))))))))))....... ( -9.56 = -10.62 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:31 2006