Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,589,436 – 6,589,548 |
Length | 112 |
Max. P | 0.719630 |
Location | 6,589,436 – 6,589,548 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 88.30 |
Mean single sequence MFE | -36.34 |
Consensus MFE | -26.84 |
Energy contribution | -27.88 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.18 |
Mean z-score | -1.86 |
Structure conservation index | 0.74 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6589436 112 - 27905053 AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAUCGCUUAAGGAGUUUUCUAUAUGGCUGACGCUUAAAGUCGCCUCGACUUCGCUACUCUUUAAAGUAGAGU ..(((......)))((((.((((((((....(((((((((....)).)))))))...)).....(((.(((.......))))))....))))))((((......)))))))) ( -32.00) >DroSec_CAF1 1912 112 - 1 AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGACGCUUAAAGUCGCCUCGACUUCGCUAAUGUUUAAAGUAAAGU .((((....((((.(((..(((((((((((.(((...(((....))).))))))))))))))..))).).)))...((((((...)))))).))))................ ( -34.90) >DroSim_CAF1 2589 112 - 1 AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGAUGCUUAAAGUCGCCUCGACUUCGCUAACGUUUAAUGUAGAGU .((((......((.(((..(((((((((((.(((...(((....))).))))))))))))))..)))....))...((((((...)))))).))))................ ( -33.30) >DroEre_CAF1 2284 112 - 1 AUGGCCAAUGUGCUGCUCAGCGGCGGAUUCUCUACUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGACGCUCAAAGACGACUCCACUUGGCUAACACUUAAAGUAGAGU .(((((((.(((..(((((((((((((..((((....(((....)))...))))...))))))..))))).))((......))...))))))))))..((((......)))) ( -38.80) >DroYak_CAF1 2200 112 - 1 AUGUCUAAUGUGCUGCUCAGCGCCAGAUUCUCUACUUGGCUAACGCUUAGGGAGUUUUCCGCCUGGCUGGUGCUCAAAGACGACUCCACUUGGCUAACGCCCAAAGUAGAGU .(((((...(..(((((..(((..((((((((((...(((....)))))))))))))..)))..))).))..)....)))))((((.(((((((....)))..)))).)))) ( -42.70) >consensus AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGACGCUUAAAGUCGCCUCGACUUCGCUAACGUUUAAAGUAGAGU .(((((...((((.(((..(((((((((((.(((...(((....))).))))))))))))))..))).).)))....))))).(((.((((.((....))...)))).))). (-26.84 = -27.88 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:22 2006