Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,582,999 – 6,583,164 |
Length | 165 |
Max. P | 0.951174 |
Location | 6,582,999 – 6,583,101 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -16.16 |
Energy contribution | -16.96 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.10 |
Mean z-score | -2.07 |
Structure conservation index | 0.57 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6582999 102 - 27905053 UAGCAGAUCUAGUUAUGGUCUGGAUCUGUAGAUUGGGCUUAUCUGCAAUCUCACUUAACGCCUCGUCAUCGUGAUCGUGACGUGGCUAUCUCUGAACACAAA ..((((((((((.......))))))))))((((((.(......).))))))........(((.(((((.((....))))))).)))................ ( -32.40) >DroSec_CAF1 662 96 - 1 ------AUCUAGAUCUGGUCUGGAUCUUCAGAUUGCGCUUAUCUGGCAGCUCACUUAACGCCUCGUCAUCGUGAUCGUGACGUGGCUAUCUCUGCACACAAA ------((((((((...))))))))...((((..(((((.....))).)).........(((.(((((.((....))))))).)))....))))........ ( -26.80) >DroSim_CAF1 616 96 - 1 ------AUCUAGAUCUGGUCUGGAUCUUCAGAUUGCGCUUAUCUGGCAGCUCACUUAACGCCUCGUCAUCGUGAUCGUGACGUGGCUAUCUCUGCACACAAA ------((((((((...))))))))...((((..(((((.....))).)).........(((.(((((.((....))))))).)))....))))........ ( -26.80) >DroEre_CAF1 632 85 - 1 -----------------AUGUGGAUCUGUAGAUUGGGCUUAUCUGACAGCUCACCUAACGCCUAGUCAUCGUGAUCGUGACGUGGUUAUCUCUGCUCACAAA -----------------.....((((((..(((((((((((..(((....)))..))).))))))))..)).))))((((.(..(......)..)))))... ( -24.90) >DroYak_CAF1 634 85 - 1 -----------------ACGUGGAUCUGUAGACUGGGCUUAUCUGACAGCUCACUUAACGCCUAGUCAUCGUGAUCGUGACGUGGCUAUCGCUGCUCACAAA -----------------.....((((((..(((((((((((..(((....)))..))).))))))))..)).))))((((.(..((....))..)))))... ( -31.10) >consensus ______AUCUAG_U_UGGUCUGGAUCUGUAGAUUGGGCUUAUCUGACAGCUCACUUAACGCCUCGUCAUCGUGAUCGUGACGUGGCUAUCUCUGCACACAAA ............................((((.((((((........))))))......(((.(((((.((....))))))).)))....))))........ (-16.16 = -16.96 + 0.80)
Location | 6,583,026 – 6,583,141 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 86.10 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -22.80 |
Energy contribution | -22.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -2.24 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6583026 115 - 27905053 GAUCUAGAUCUGGUUUUGAUCUGCAGAUAAUGCUUGGAGAUAGCAGAUCUAGUUAUGGUCUGGAUCUGUAGAUUGGGCUUAUCUGCAAUCUCACUUAACGCCUCGUCAUCGUGAU .....(((((.......)))))((((((((.(((..(.....((((((((((.......))))))))))...)..)))))))))))....((((...(((...)))....)))). ( -37.30) >DroSec_CAF1 689 101 - 1 GAUCUAGAUCUGGUUUUGAUCUGUAGAUAAUG--------------AUCUAGAUCUGGUCUGGAUCUUCAGAUUGCGCUUAUCUGGCAGCUCACUUAACGCCUCGUCAUCGUGAU ((((((((((.(((((.((((..........)--------------))).))))).)))))))))).((((((.(((((.....))).((.........))...)).))).))). ( -29.20) >DroSim_CAF1 643 101 - 1 GAUCUAGAUCUGGUUUUGAUCUGUAGAUAAUG--------------AUCUAGAUCUGGUCUGGAUCUUCAGAUUGCGCUUAUCUGGCAGCUCACUUAACGCCUCGUCAUCGUGAU ((((((((((.(((((.((((..........)--------------))).))))).)))))))))).((((((.(((((.....))).((.........))...)).))).))). ( -29.20) >consensus GAUCUAGAUCUGGUUUUGAUCUGUAGAUAAUG______________AUCUAGAUCUGGUCUGGAUCUUCAGAUUGCGCUUAUCUGGCAGCUCACUUAACGCCUCGUCAUCGUGAU ((((((((((.(((((.(((..........................))).))))).)))))))))).((((((.......))))))....((((...(((...)))....)))). (-22.80 = -22.80 + 0.00)
Location | 6,583,066 – 6,583,164 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -20.22 |
Consensus MFE | -12.02 |
Energy contribution | -12.69 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.86 |
Structure conservation index | 0.59 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6583066 98 + 27905053 CAAUCUACAGAUCCAGACCAUAACUAGAUCUGCUAUCUCCAAGCAUUAUCUGCAGAUCAAAACCAGAUCUAGAUCUGCUAUCUCCAAGCACUAUCUGU ......((((((..((.......(((((((((..........(((.....)))..........)))))))))...((((.......)))))))))))) ( -21.35) >DroSec_CAF1 729 84 + 1 CAAUCUGAAGAUCCAGACCAGAUCUAGAU--------------CAUUAUCUACAGAUCAAAACCAGAUCUAGAUCUGCUAUGUCCGAGCACCAUCUGA .............((((..((((((((((--------------(.....................)))))))))))(((.......)))....)))). ( -19.70) >DroSim_CAF1 683 84 + 1 CAAUCUGAAGAUCCAGACCAGAUCUAGAU--------------CAUUAUCUACAGAUCAAAACCAGAUCUAGAUCUGCUAUCUCCAAGCACCAUCUGA .............((((..((((((((((--------------(.....................)))))))))))(((.......)))....)))). ( -19.60) >consensus CAAUCUGAAGAUCCAGACCAGAUCUAGAU______________CAUUAUCUACAGAUCAAAACCAGAUCUAGAUCUGCUAUCUCCAAGCACCAUCUGA .............((((..((((((((((.....................................))))))))))(((.......)))....)))). (-12.02 = -12.69 + 0.67)
Location | 6,583,066 – 6,583,164 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -17.90 |
Energy contribution | -18.57 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.41 |
Structure conservation index | 0.62 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6583066 98 - 27905053 ACAGAUAGUGCUUGGAGAUAGCAGAUCUAGAUCUGGUUUUGAUCUGCAGAUAAUGCUUGGAGAUAGCAGAUCUAGUUAUGGUCUGGAUCUGUAGAUUG ....................(((((((((((((.......(((((((..................))))))).......)))))))))))))...... ( -30.01) >DroSec_CAF1 729 84 - 1 UCAGAUGGUGCUCGGACAUAGCAGAUCUAGAUCUGGUUUUGAUCUGUAGAUAAUG--------------AUCUAGAUCUGGUCUGGAUCUUCAGAUUG ...((.(((.(.(((((....((((((((((((..((((........))))...)--------------)))))))))))))))))))).))...... ( -27.50) >DroSim_CAF1 683 84 - 1 UCAGAUGGUGCUUGGAGAUAGCAGAUCUAGAUCUGGUUUUGAUCUGUAGAUAAUG--------------AUCUAGAUCUGGUCUGGAUCUUCAGAUUG ...........((((((((..((((.((((((((((.((..(((....)))...)--------------).)))))))))))))).)))))))).... ( -29.20) >consensus UCAGAUGGUGCUUGGAGAUAGCAGAUCUAGAUCUGGUUUUGAUCUGUAGAUAAUG______________AUCUAGAUCUGGUCUGGAUCUUCAGAUUG ........((((.......))))((((((((((.(((((.(((..........................))).))))).))))))))))......... (-17.90 = -18.57 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:20 2006