Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,580,121 – 6,580,213 |
Length | 92 |
Max. P | 0.722503 |
Location | 6,580,121 – 6,580,213 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 81.26 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -13.64 |
Energy contribution | -14.37 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.18 |
Mean z-score | -2.18 |
Structure conservation index | 0.59 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6580121 92 - 27905053 GCCUAUGUUCUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAGGUAUCUUUGGUAUCUU ...........((((..((((((((((........(((((((.....))))))).....))))........)))))).....))))...... ( -22.82) >DroSec_CAF1 57056 89 - 1 GCCUAUGUUUUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAAGUAUAUUAGGUAU--- ((((((((((((((........(((((........(((((((.....))))))).....)))))......))).))).))).)))))..--- ( -21.96) >DroSim_CAF1 57110 89 - 1 GCCUAUGUUCUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAGGUAUAUUAGGUAU--- ((((((((((((((........(((((........(((((((.....))))))).....)))))......))).))).))).)))))..--- ( -24.06) >DroEre_CAF1 60768 89 - 1 GCCUAUGUUUUCCAAUCCCUAUUUGGCCAUUUCACUGCAGGUGUAUUGCCUGCACUUCUGCCAGAUUAUGUGGUAAGUAUAUCUGAAAU--- ...(((((((.(((......(((((((........(((((((.....))))))).....)))))))....))).)))))))........--- ( -22.42) >DroYak_CAF1 60302 89 - 1 GCCCAUGUUUUCCAAUCCCUAUUUGGCCAUUUCACUGCAGGUGUAUUGCCUGCAUUUCUGUCAGAUUAUGUGGUAGGUAAAUAUGGAAU--- ..((((((((.((.(((.(.(((((((........(((((((.....))))))).....)))))))...).))).)).))))))))...--- ( -28.32) >DroMoj_CAF1 105833 87 - 1 ACCAAUGUGCAAAUGCCCUUAUCUGGGAGUGUCUAUUCACGUUUAUCUGCUGCACUUUUGCCAAAUUAUGUGGUAAAUA--UUACAAAU--- ......(((((....(((......))).(((......)))..........))))).(((((((.......)))))))..--........--- ( -19.00) >consensus GCCUAUGUUCUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAAGUAUAUUAGGAAU___ (((.....................)))........(((((((.....)))))))..(((((((.......)))))))............... (-13.64 = -14.37 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:16 2006