Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,576,048 – 6,576,144 |
Length | 96 |
Max. P | 0.994089 |
Location | 6,576,048 – 6,576,144 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 73.57 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -11.20 |
Energy contribution | -13.42 |
Covariance contribution | 2.22 |
Combinations/Pair | 1.18 |
Mean z-score | -2.46 |
Structure conservation index | 0.35 |
SVM decision value | 2.45 |
SVM RNA-class probability | 0.994089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6576048 96 - 27905053 GCAUUUACGAAGAAAUUAAGA----------GU---CACCUUCCGGAAGAAAUCCGUCGAGCUCA--AUGGUUUCUAUGGCACCGCGUUAUUAAAUGUGGCAUAAGUGCAG----- (((((((((.((((((((.((----------((---.......((((.....))))....)))).--.)))))))).))...(((((((....)))))))..)))))))..----- ( -26.30) >DroSec_CAF1 52977 98 - 1 GCAUUUACGAAGAAAUUAAGA----------GU---CAGCUUCUGGGAGAAAUCCGUGGAGCUCAGAAUGGUUUCUAUGGCGCCGCGUUAUUAAAUGUGGCAUAAGUGCAG----- (((((((((.((((((((...----------.(---(((((((..(((....)))..))))))..)).)))))))).))..((((((((....)))))))).)))))))..----- ( -36.90) >DroSim_CAF1 53042 98 - 1 GCAUUUACGGAGAAAUUAAGA----------GU---CAGCUUCCGGGGGAAAUCCGUGGAGCUCAAAAUGGUUUCUAUGGUGCCGCGUUAUUAAAUGUGGCAUAAGUGCAG----- ((((((.((.((((((((...----------..---.((((((((((.....)))).)))))).....)))))))).))((((((((((....))))))))))))))))..----- ( -37.80) >DroYak_CAF1 56051 95 - 1 GCAUUUACGAAGAAAUUAAGA----------GU---CAGCUUCCGCUGGAAAUCCGUCGUG-UC--AAUGGUUUCUAGGGCGCUGCAUUAUUAAAUGUGGCAUAAGUGCAG----- (((((((..............----------..---......((.(((((((.((((....-..--.))))))))))))).((..((((....))))..)).)))))))..----- ( -27.40) >DroAna_CAF1 58982 104 - 1 ACUCUGCAGGAGCAAUUAAGGCAUGUGCAACGUCUCCAGGCUCUG----------GUCGACCGCA--AAGGUUUCUAUGGCGCUGUGGCAUUAAGUGAGCCACAAUUGCAGUAACA ...(((((((((........((....)).....))))..(((.((----------(..((((...--..)))).))).)))..((((((.........))))))..)))))..... ( -30.12) >consensus GCAUUUACGAAGAAAUUAAGA__________GU___CAGCUUCCGGGAGAAAUCCGUCGAGCUCA_AAUGGUUUCUAUGGCGCCGCGUUAUUAAAUGUGGCAUAAGUGCAG_____ (((((((...((((((((.........................((((.....))))..(....)....)))))))).....((((((((....)))))))).)))))))....... (-11.20 = -13.42 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:15 2006