Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,573,254 – 6,573,344 |
Length | 90 |
Max. P | 0.584344 |
Location | 6,573,254 – 6,573,344 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -31.72 |
Consensus MFE | -20.08 |
Energy contribution | -20.17 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.30 |
Mean z-score | -1.46 |
Structure conservation index | 0.63 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6573254 90 + 27905053 UUGUGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGUAUGACGAAGGCG------AAGC ((((((((((((.(..((((..(((..(((((((....)))))))..(.....))))....))))..))))))))).)))).....------.... ( -32.10) >DroSec_CAF1 50157 86 + 1 UUGCGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUAAGCAAAUCCCAUACGCGUGU----CGAAGGCG------AAGC .((((....))))((....))((((..((.((((....((((((((....((....))....))))))))))))----))..))))------.... ( -28.00) >DroSim_CAF1 50195 86 + 1 UUGCGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGU----CGAAGGCG------AAGC .((((....))))((....))((((..(((((((....)))))))((((.((((((.....))))))....)))----)...))))------.... ( -33.70) >DroEre_CAF1 53785 80 + 1 UUGCGUAUACGCCGCGUGGGACGCUGACGCGCACUGAAGUGUGUGGACAAUGUGAGCAAAUCCCAUACGCGUGG----CGA------------AGC .........((((((((((((.(((.((((((((....)))))).......)).)))...))))....))))))----)).------------... ( -30.81) >DroYak_CAF1 53155 92 + 1 UUGCGUAUCCGCAACGUGGGAUGCUGACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGG----CGAAGGCGAAAGCAAAGC ..((.....(((.(((((.........(((((((....))))))).....((((((.....))))))))))).)----))...((....))...)) ( -33.50) >DroAna_CAF1 56502 75 + 1 UUGCGUAUACGCCGCGUGGGCUGCUCAUUCGCACUGAAGUGUGUG-----------CGAAGUCCGCACGCGUGG----CCGAGGGG------CAAC ((((.(....((((((((.((.(....(((((((........)))-----------))))..).)).)))))))----)....).)------))). ( -32.20) >consensus UUGCGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGG____CGAAGGCG______AAGC .......(((((...(((((..(((..(((((((....))))))).........)))....)))))..)))))....................... (-20.08 = -20.17 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:14 2006