Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,572,592 – 6,572,682 |
Length | 90 |
Max. P | 0.809473 |
Location | 6,572,592 – 6,572,682 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -18.77 |
Energy contribution | -18.80 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.31 |
Mean z-score | -1.74 |
Structure conservation index | 0.62 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6572592 90 + 27905053 CCUACGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGUUGGCUACAU------------------------GAGCCA--CUUUUGUCUCGGCCAGAUAA (((.(((.(((((((.....))))))).))).)))(((((...((((((.....))))))....------------------------))))).--...((((((.....)))))) ( -29.00) >DroSec_CAF1 49498 90 + 1 CCUUCGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUUUGUCUCGGCCAGAUGA (((((((.(((((((.....))))))).)))))))(((((.((((((.....))))))......------------------------))))).--...(..(((.....)))..) ( -32.50) >DroSim_CAF1 49538 90 + 1 CCUUCGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUUUCUCUGGGCCAGAUGA (((((((.(((((((.....))))))).)))))))(((((...((((.....))))((((....------------------------.)))).--.........)))))...... ( -34.30) >DroEre_CAF1 53124 90 + 1 CCUCCGGAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUCUGUUUUGGCCAGAUAA (((.((..(((((((.....)))))))..)).)))(((((.((((((.....))))))......------------------------))))).--..((((.......))))... ( -29.30) >DroYak_CAF1 52491 90 + 1 UCUACGGAAUGUCACAGUUCGUGGCGUCUCGAAGGGUUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUUUGUCUUGGCCAGAUAA (((.((..(((((((.....)))))))..)).))).........((((((((((.(((((....------------------------.)))))--..))))).)))))....... ( -26.80) >DroAna_CAF1 55848 115 + 1 CAUCCGGAAUGUUACAGUUGAAGGCGCCUCAAAGGGUUU-CUUAGCUUUCUCAACUGCUCACACUAUUGGAUAAACUUUGGGGCCGUAGAGGCAGUCAUUCGGCAUGGCCAGAUAA .(((.((.......((((((((((((((((..(.(((..-(..((.((..((((..(......)..))))..)).))..)..))).).))))).))).)))))).)).)).))).. ( -30.20) >consensus CCUACGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU________________________GAGCCA__CUUUUGUCUUGGCCAGAUAA (((.(((.(((((((.....))))))).))).))).........(((..(((((.(((((.............................)))))....)))))...)))....... (-18.77 = -18.80 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:13 2006