Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,571,246 – 6,571,359 |
Length | 113 |
Max. P | 0.889463 |
Location | 6,571,246 – 6,571,359 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 95.22 |
Mean single sequence MFE | -29.99 |
Consensus MFE | -24.50 |
Energy contribution | -25.50 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.82 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6571246 113 - 27905053 AACCGGAGAAAAGGCAACCAGAGAACCAGGCACAAAAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAUGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA ............(((.((.......((.(((............))).))........)).)))(((((((.(((.....((((......)))))))..)))))))........ ( -28.76) >DroSec_CAF1 48105 113 - 1 AACCGGAGACAAGGCAACCAGAGAAGCAGGCACAAAAUAUAUAGCUUGGGAAAUAAAGCAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA ((((((.(.(((.((((((...(((...(((............((((........))))...(....)...)))..))).)))))).))))))))))................ ( -32.90) >DroSim_CAF1 48118 113 - 1 AACCGGAGACAAGGCAACCAGAGAAGCAGGCACAAAAUAUAUAGCUAGGGAAAUAAAGCAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA ((((((.(.(((.((((((...(((...(((............(((..........)))...(....)...)))..))).)))))).))))))))))................ ( -30.20) >DroEre_CAF1 51696 111 - 1 AACCGGAG-CAAGGCAACCAGAGAACCAGGCACA-GAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA ((((((.(-(((.((((((...(((...(((...-........((((...........))))(....)...)))..))).)))))).))))))))))................ ( -32.90) >DroYak_CAF1 51061 112 - 1 AACCGGAGACACAGCAACCAGAGAACCAGACGCA-AAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA ....(....)...(((......(((((....((.-........))..(((.(((...((((((.((((........))))))))))))).))))))))....)))........ ( -25.20) >consensus AACCGGAGACAAGGCAACCAGAGAACCAGGCACAAAAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA ((((((.(.(((.((((((...(((...(((............((((...........))))(....)...)))..))).)))))).))))))))))................ (-24.50 = -25.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006