Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,565,565 – 6,565,660 |
Length | 95 |
Max. P | 0.647109 |
Location | 6,565,565 – 6,565,660 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.36 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -13.95 |
Energy contribution | -14.23 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -2.85 |
Structure conservation index | 0.51 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6565565 95 + 27905053 ACCUGUCUGUUU-ACCUGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUG-GCAGACAGGUCAUAAUUUGACCAACAA---------UUAUGGC ((((((((((..-.......(......)...........(((((-(((.(....)))))))))-))))))))))(((((((........))---------))))).. ( -28.10) >DroSec_CAF1 42401 96 + 1 ACCUGUCUGUUU-ACCCGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUGGGCAGACAGGUCAUAAUUUGACCAACAA---------UUAUGGG (((((((((((.-...((........))...........(((((-(((.(....))))))))))))))))))))(((((((........))---------))))).. ( -30.20) >DroSim_CAF1 42396 95 + 1 ACCUGUCUGUUU-ACCCGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUG-GCAGACAGGUCAUAAUUUGACCAACAA---------UUAUGGG ((((((((((..-...((........))...........(((((-(((.(....)))))))))-))))))))))(((((((........))---------))))).. ( -29.70) >DroEre_CAF1 45641 95 + 1 ACCUGUCUGUUU-ACCUGUACUUUUCCAACCAUUAAUAACACGG-CCAUGGCAACUGGUUGUG-ACAGACAGGUCAUAAUUUGACCAACAA---------UUAUCAU ...(((((((..-...((........))...........(((((-(((.(....)))))))))-)))))))(((((.....))))).....---------....... ( -27.50) >DroWil_CAF1 45030 102 + 1 GCCAUUCCGUUUUGGUGGCAAUUUUCAGGCCAUUAACAAUAGGGACAAUGGAAAAU----CUG-GUAGACAGGUAAUAAUUUGUCCAACCAGGCCAAAAUUCAAAAC .(((((((.(.((((((((.........))))))))....).)))..))))....(----(((-((.(((((((....)))))))..)))))).............. ( -27.00) >DroYak_CAF1 45083 95 + 1 ACCUGUCUGUUU-ACCCGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUG-GCAGCCAGGUCAUAAUUUGACCAACAA---------UUAUCAU ...((.((((..-...((........))...........(((((-(((.(....)))))))))-)))).))(((((.....))))).....---------....... ( -22.00) >consensus ACCUGUCUGUUU_ACCCGUACUUUUCCGACCAUUAAUAACACGG_CUAUGGCAACUGGUUGUG_GCAGACAGGUCAUAAUUUGACCAACAA_________UUAUGAC ((((((((((.......((.........)).........(((((.(((.(....))))))))).))))))))))................................. (-13.95 = -14.23 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:10 2006