Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,565,093 – 6,565,208 |
Length | 115 |
Max. P | 0.788899 |
Location | 6,565,093 – 6,565,208 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -18.15 |
Energy contribution | -18.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -0.97 |
Structure conservation index | 0.78 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6565093 115 - 27905053 ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUUUAACAUUAUGCUAAGUGAAUUCUGAAUAUUUAUAACCAUAAAUUAAUCA ..((((((((....((.((((...((((.....)))))))).))...))))))))..((((((........))))))...((((((.......))))))................ ( -23.60) >DroGri_CAF1 56577 92 - 1 ACAGUUUGCUUCAUGAUGUGGCCCGAUGGACGUUAUCCCACAUCAAUGGCGGACUAUGUGUAACUAUUUGUUUAUGUUC---------------UUUACCAACAUUG-------- ..((((((((...((((((((...((((.....))))))))))))..))))))))(((((.(((.....))))))))..---------------.............-------- ( -21.80) >DroSec_CAF1 41966 112 - 1 ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCAAUGGCGGACUAUGCGUAAGUUUAACACAAUGUUUAAUGAAUUUUGAAUUUUUAAAA---UAAAAUAAUCA ..((((((((...(((.((((...((((.....)))))))).)))..))))))))..((....))...................(((((((....))))))---).......... ( -23.00) >DroSim_CAF1 41925 115 - 1 ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUUUUACAUUAUGCCAAAUGAAUUUGGAAUUUUUACAAUAAUAAAUUAAUCA ..((((((((....((.((((...((((.....)))))))).))...))))))))..((((((........))))))......((((((..(((.....)))..))))))..... ( -22.50) >DroEre_CAF1 45172 115 - 1 ACAGUUUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUAUGAAAUUAUGCUGAAUGAAUUUUCAAAUUUUAGUAUAAUAAAUUAAUCG ....((((((....((.((((...((((.....)))))))).))...))))))((((((....)))))).((((((((((((((....)))...))))))))))).......... ( -27.30) >DroYak_CAF1 44628 99 - 1 ACAGUUUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUAUGAAAACAAGCAAUAUAAUUUUUGAAAUUGUAC---------------- ....((((((....((.((((...((((.....)))))))).))...))))))((((((....))))))..((((.(((........)))...))))..---------------- ( -21.60) >consensus ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUAUAACAUUAUGCUAAAUGAAUUUUGAAUUUUUACAA__AUAAAUUAAUCA ..((((((((....((.((((...((((.....)))))))).))...))))))))..((((((........))))))...................................... (-18.15 = -18.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:09 2006