Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,542,280 – 6,542,400 |
Length | 120 |
Max. P | 0.725876 |
Location | 6,542,280 – 6,542,400 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -23.38 |
Energy contribution | -22.88 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -1.63 |
Structure conservation index | 0.87 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6542280 120 - 27905053 GCAUGUUUUGGACUCACAGAAGCCCGCACUGUUUUACAUCCACAACCGGCAAAAAAAAACAUUGCCCUUGGACUGCAUUUUAAUGUCCAACUUGUGGUUCAGUAAACAACUAAAACUCUC ....(((((((....((((.........))))(((((..((((((..(((((.........))))).((((((...........)))))).))))))....)))))...))))))).... ( -27.60) >DroSim_CAF1 18594 118 - 1 GCAUGUUUUGGACUCACAGAAGCCCGCACUGUUUUACAUCCACAACCGGCAAAA--AAACAUUGCCCUUGGACUGCAUUUUAAUGUCCAACUUGUGGUUCAGUAAACAACUAAAACUCUC ....(((((((....((((.........))))(((((..((((((..(((((..--.....))))).((((((...........)))))).))))))....)))))...))))))).... ( -28.10) >DroEre_CAF1 21360 118 - 1 GCGUUUUUUGGACUCACAGAAGCUCGCACAGUUGUACAUCCACAGCCGGCGGAA--AAACAAUGCCCUUGCACUGCAUUUUAAUGUCCAACUUGUGGUUCAGUACACAACCAAAACUCUU ..(((((((((((....(((.((((((.(.(((((......))))).)))))..--......(((....)))..)).)))....)))))).(((((........)))))..))))).... ( -25.60) >DroYak_CAF1 19580 118 - 1 GCAUGUUUUGGACUCACAGAAGCCCGCACAGUUUUACAUCCACAACCGGCGGAA--AAACAAUGCCCUUGGACUGCAUUUUAAUGUCCAACUUGUGGUUCAGUAAACAACUAAAACUCUC ...((((((((((.(((((......(((..(((((...(((.(.....).))))--))))..)))..((((((...........)))))).))))))))))..)))))............ ( -26.10) >consensus GCAUGUUUUGGACUCACAGAAGCCCGCACAGUUUUACAUCCACAACCGGCAAAA__AAACAAUGCCCUUGGACUGCAUUUUAAUGUCCAACUUGUGGUUCAGUAAACAACUAAAACUCUC ....(((((((..........(....).....(((((..((((((..((((...........)))).((((((...........)))))).))))))....)))))...))))))).... (-23.38 = -22.88 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:00 2006