Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 923,659 – 923,761 |
Length | 102 |
Max. P | 0.973036 |
Location | 923,659 – 923,761 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.27 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -15.98 |
Energy contribution | -15.78 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.24 |
Mean z-score | -2.09 |
Structure conservation index | 0.60 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 923659 102 + 27905053 UUUUCAUGAUGCAAAGCGACUAUCUGCGAGAUACCAAAAAGAGGCUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC------------------CA ......(((((....(((......)))(((((..(.....).((.(((((((.(........).))))))).)))))))...............))))).------------------.. ( -20.90) >DroSec_CAF1 12658 101 + 1 UUUUCUUGAUGCAAAGCGAGUAUCUGCGAGAUACCGA-AAGAGGAUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC------------------CA ......(((((...((((.((....))(((((..(..-..).((((((((((.(........).)))))))))))))))...........))))))))).------------------.. ( -29.10) >DroSim_CAF1 18548 101 + 1 UUUUCAUGAUGCAAAGCGAGUAUCUGCGAGAUACCGA-AAGAGGAUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC------------------CA ......(((((...((((.((....))(((((..(..-..).((((((((((.(........).)))))))))))))))...........))))))))).------------------.. ( -29.20) >DroEre_CAF1 13771 108 + 1 UUUCCAUGGUGCACAGCGAGUAUCUACCAAAUACCAA-GGGAGGCUAUCUGUACAACUC-GCGAGCAGAUAUCCAUCCCUUCAUUCC---------UCGCCUUGUUUUCCC-GGACUCUA ..(((..((.(((..((((((((.......)))).((-((((((.(((((((.(.....-..).))))))).)).))))))......---------))))..)))...)).-)))..... ( -30.30) >DroYak_CAF1 33454 117 + 1 UUUUCAUGGUGCAUAGUGAGUAUCUACCAAAUACCGA-GGGAAGCUAUCUGUACAACUC-CCGAGCAGAGAUCCAUCCCAUUAUUCUU-AAGUUUAUCACCUUGUUUUCCUUGAACUCGA ..((((.((.(((..((((((((.......))))...-((((.(...(((((.(.....-..).)))))....).)))).........-.......))))..)))...)).))))..... ( -23.30) >consensus UUUUCAUGAUGCAAAGCGAGUAUCUGCGAGAUACCGA_AAGAGGCUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC__________________CA .....((((((......(.(((((.....))))))....(((((.(((((((.(........).))))))).)).))))))))).................................... (-15.98 = -15.78 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:15 2006