Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 205,251 – 205,371 |
Length | 120 |
Max. P | 0.993958 |
Location | 205,251 – 205,371 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.33 |
Mean single sequence MFE | -40.62 |
Consensus MFE | -33.56 |
Energy contribution | -34.28 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.10 |
Mean z-score | -1.29 |
Structure conservation index | 0.83 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 205251 120 + 27905053 CUUCUUCCUGCUGACCAACCCGCUUAAUGUGCUGGCCUCCGCCUCGAAGUUGGAGGAGGCCCGCCAGAUUGUGAUAAAGUACCGGGCUGGUAAGAAAGAAGAGUAGGUAACCAAAUUAGA .((((((...((.((((.((((......((((((((((((.((........)).)))))))(((......)))....))))))))).)))).))...))))))................. ( -42.00) >DroSec_CAF1 30998 120 + 1 CUUCUUCCUGCUGACCAACCCGCUGAAUGUGCUGGCCUCCGCCUCGAAGUUGGAGGAGGCCCGCCAGAUCGUGAUAAAGUACCGGGCUGGUAAGAAAGUAGAGUAAGUCACCAAAUUAGC ...(((((((((.((((.((((..((.((.((.(((((((.((........)).))))))).))))..))(((......))))))).)))).....))))).).)))............. ( -40.90) >DroSim_CAF1 31788 120 + 1 CUUCUUCCUGCUGACCAACCCGCUGAAUGUGCUGGCCUCCGCCUCGAAGUUGGAGGAGGCCCGCCAGAUCGUGAUAAAGUACCGGGCUGGUAAGAAAGUAGAGUAAGUCACCAAAUUAGC ...(((((((((.((((.((((..((.((.((.(((((((.((........)).))))))).))))..))(((......))))))).)))).....))))).).)))............. ( -40.90) >DroEre_CAF1 32920 118 + 1 CUUCUUCCUGCUGACCAACCCGCUUAAUGUGCUGGCCUCCGACUCGAAGUUGGAGGAGGCCCGCCAGAUAGUGCUGAGGUACCGGGCUGGUAAGAAAC--CAAUUAGUCACCAAUUUAGC .(((((((.(((.(((....((((...((.((.(((((((..(........)..))))))).))))...))))....)))....))).)).)))))..--.................... ( -38.20) >DroYak_CAF1 32636 120 + 1 CUUCUUCCUGCUGACCAACCCGCUUAAUGUGCUGGCCUCCGACUCGAAGUUAGAGGAGGCCCGCCAGAUAGUGCUGAGGUACCGGGCUGGUAAGAAAGAGGACUCUAUCACCAAUUUAGC ((((((.((....((((.((((.....((.((.((((((((((.....)))...))))))).))))....((((....)))))))).)))).)).))))))................... ( -41.10) >consensus CUUCUUCCUGCUGACCAACCCGCUUAAUGUGCUGGCCUCCGCCUCGAAGUUGGAGGAGGCCCGCCAGAUAGUGAUAAAGUACCGGGCUGGUAAGAAAGAAGAGUAAGUCACCAAAUUAGC .((((.....((.((((.((((......((((((((((((.((........)).)))))))(((......)))....))))))))).)))).)).....))))................. (-33.56 = -34.28 + 0.72)
Location | 205,251 – 205,371 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.33 |
Mean single sequence MFE | -44.04 |
Consensus MFE | -38.20 |
Energy contribution | -38.64 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.87 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 205251 120 - 27905053 UCUAAUUUGGUUACCUACUCUUCUUUCUUACCAGCCCGGUACUUUAUCACAAUCUGGCGGGCCUCCUCCAACUUCGAGGCGGAGGCCAGCACAUUAAGCGGGUUGGUCAGCAGGAAGAAG ..................(((((((.((.(((((((((((........))....((((.(((((((.((........)).))))))).)).)).....))))))))).)).))))))).. ( -47.20) >DroSec_CAF1 30998 120 - 1 GCUAAUUUGGUGACUUACUCUACUUUCUUACCAGCCCGGUACUUUAUCACGAUCUGGCGGGCCUCCUCCAACUUCGAGGCGGAGGCCAGCACAUUCAGCGGGUUGGUCAGCAGGAAGAAG ........(....)....(((.(((.((.(((((((((((........))((....((.(((((((.((........)).))))))).))....))..))))))))).)).))).))).. ( -45.20) >DroSim_CAF1 31788 120 - 1 GCUAAUUUGGUGACUUACUCUACUUUCUUACCAGCCCGGUACUUUAUCACGAUCUGGCGGGCCUCCUCCAACUUCGAGGCGGAGGCCAGCACAUUCAGCGGGUUGGUCAGCAGGAAGAAG ........(....)....(((.(((.((.(((((((((((........))((....((.(((((((.((........)).))))))).))....))..))))))))).)).))).))).. ( -45.20) >DroEre_CAF1 32920 118 - 1 GCUAAAUUGGUGACUAAUUG--GUUUCUUACCAGCCCGGUACCUCAGCACUAUCUGGCGGGCCUCCUCCAACUUCGAGUCGGAGGCCAGCACAUUAAGCGGGUUGGUCAGCAGGAAGAAG (((((((..((.....))..--))))...(((((((((.(....(((......)))((.(((((((..(........)..))))))).))......).))))))))).)))......... ( -41.50) >DroYak_CAF1 32636 120 - 1 GCUAAAUUGGUGAUAGAGUCCUCUUUCUUACCAGCCCGGUACCUCAGCACUAUCUGGCGGGCCUCCUCUAACUUCGAGUCGGAGGCCAGCACAUUAAGCGGGUUGGUCAGCAGGAAGAAG ..................((.((((.((.(((((((((.(....(((......)))((.(((((((.((.......))..))))))).))......).))))))))).)).)))).)).. ( -41.10) >consensus GCUAAUUUGGUGACUUACUCUACUUUCUUACCAGCCCGGUACUUUAUCACGAUCUGGCGGGCCUCCUCCAACUUCGAGGCGGAGGCCAGCACAUUAAGCGGGUUGGUCAGCAGGAAGAAG ......................((((((.(((((((((((........))....((((.(((((((.((........)).))))))).)).)).....)))))))))....))))))... (-38.20 = -38.64 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:31 2006