Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,534,307 – 6,534,417 |
Length | 110 |
Max. P | 0.629649 |
Location | 6,534,307 – 6,534,417 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.84 |
Mean single sequence MFE | -32.43 |
Consensus MFE | -21.52 |
Energy contribution | -21.92 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.32 |
Mean z-score | -1.41 |
Structure conservation index | 0.66 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6534307 110 - 27905053 UAAUGGAACUAUCUACAUGGAUAGGAUGGAUCUCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAAGGUCGAUCCGCCAUUUGGUUUCACAAGUAAU---------- ...((((((((.....((((...(((((((....)))(((((((.((((.(((....)))(........))))).)))))))..)))).)))).))))))))........---------- ( -34.30) >DroSec_CAF1 11351 110 - 1 UAAUGGAACUAUCUACAUGGAUAAGAUGGAUUUCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAGGGUCGAUCCGCCAUUUGGUUUCAUAAGUAAG---------- ..((((((((((((....)))).((((((.....((.(((((((.((((.(((....)))(........))))).))))))).))....)))))))))))))).......---------- ( -32.60) >DroSim_CAF1 10068 110 - 1 UAAUGGAACUAUCUACAUGGAUAAGAUGGAUCCCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAGGGUCGAUCCGCCAUUUGGUUUCAUAAGUAAG---------- ..((((((((((((....)))).((((((.....((.(((((((.((((.(((....)))(........))))).))))))).))....)))))))))))))).......---------- ( -32.60) >DroEre_CAF1 13418 119 - 1 GAAUGGCAUUAUCUACGUGGAUAAGAUGGAUCUCCCCACCUUCAACUGCAUUCUCUGGGAGCAAAUUAAUGUGGCUGAGGGUCGAUCCGCCAUUUGGUAUCACAAGUAAAGCUAUCCGU- (((((((.((((((....))))))...(((((.....(((((((.(..((((...((....))....))))..).))))))).))))))))))))........................- ( -34.60) >DroYak_CAF1 11474 120 - 1 GAACGGAACUAUAUACAUGGAUAAGAUGGAUCUCUCCACCUUUAAGUGCAACCUUUGGGAGCAAAUUAACGCGGCUGAGGGACGAUCCGCCAUUUGGUUUCACAAGUAAAGCUAUCUGUU .((((((......(((.((((......(((((....(((......)))...((((..(..((........))..)..))))..)))))(((....))).)).)).)))......)))))) ( -27.60) >DroAna_CAF1 17562 110 - 1 CAACGGGUGCAUCUACGUCGAUCGCAUGGACGUGUCCACAUUCCAAUGCGUCAACUGGGAGCUGAUCAACGCCGCAGAAGGUCGCUCGGCUCUUUGGUUCCACAAGUAAA---------- ..((..(((..........((.((((((((.(((....)))))).)))))))(((..((((((((.(...(((......))).).))))))).)..))).)))..))...---------- ( -32.90) >consensus UAAUGGAACUAUCUACAUGGAUAAGAUGGAUCUCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAGGGUCGAUCCGCCAUUUGGUUUCACAAGUAAA__________ ....(((((((......(((((....((((....))))((((((.((((......((....)).......)))).))))))...))))).....)))))))................... (-21.52 = -21.92 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:53 2006