Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,512,834 – 6,512,925 |
Length | 91 |
Max. P | 0.979825 |
Location | 6,512,834 – 6,512,925 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 71.37 |
Mean single sequence MFE | -25.06 |
Consensus MFE | -15.41 |
Energy contribution | -16.38 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.14 |
Mean z-score | -1.96 |
Structure conservation index | 0.61 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6512834 91 + 27905053 CUAGUGCCAGGAUAAGUACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG-------GGCCUGUGCCCAAACACCCA--CGCUGCCAUACA-----------AAAUAAAC .(((((.((((((......))))))..(((......((((......))))(-------(((....)))).....))).--))))).......-----------........ ( -26.90) >DroSec_CAF1 277366 93 + 1 CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG-------GGCCUGUGCCCAAACACCCACACGCUGCCAUAAA-----------AAAGAAAC .(((((.((((((......))))))..(((......((((......))))(-------(((....)))).....)))...))))).......-----------........ ( -26.90) >DroSim_CAF1 307823 93 + 1 CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG-------GGCCUGUGCCCAAACACCCACACGCUGCCAUAAA-----------AAAGAAAC .(((((.((((((......))))))..(((......((((......))))(-------(((....)))).....)))...))))).......-----------........ ( -26.90) >DroEre_CAF1 291143 100 + 1 CUAGUGCCAGGAUA-GCACAUCCUGCCGGGAAAAAUCCGAGUCAUAGCGG--------GGCCUGUGCCCAAACACCCA--CGCUGCCAAACAAAGUAGAAGCAAAAGAAAC ((..(((((((((.-....)))))).((((.....)))).....((((((--------((..(((......)))))).--)))))...............)))..)).... ( -24.70) >DroYak_CAF1 287202 101 + 1 CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAGUUAAAUCGG--------GGCCUGUGCCCAAGCACCCA--CGCUGCCAAACAAAUUAGAAGCAAAGGAAAA ...((((........)))).((((...(((.......(((......)))(--------(((....)))).....))).--.(((...............)))..))))... ( -25.86) >DroAna_CAF1 277864 86 + 1 --AGU-CCAGGACUAGAAGGUCCU-CUGAAAGGAGUACGGAGUA---CGAGAGACACGCGCAGAUACGCAGAUACACA--CAGUU-----CA-----------GACACACU --.((-(..(((((.....(((((-((....))))..((.....---))...)))..(((......))).........--.))))-----).-----------)))..... ( -19.10) >consensus CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG_______GGCCUGUGCCCAAACACCCA__CGCUGCCAUACA___________AAAGAAAC .(((((.((((((......))))))..(((......((((......))))........(((....)))......)))...))))).......................... (-15.41 = -16.38 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:50 2006