Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,511,958 – 6,512,053 |
Length | 95 |
Max. P | 0.643842 |
Location | 6,511,958 – 6,512,053 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -30.44 |
Consensus MFE | -21.25 |
Energy contribution | -23.22 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 0.70 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6511958 95 + 27905053 CUGUGCGACAGCAGACAUCGCAAUAAUUAUUGCUGACAGGCAGCAACAACAACAUAAAGGCAACAACAGCAGUGGGUC-------------------ACAACAAAUGGCUAAGA ((((......)))).(((.((........((((((.....))))))............(....)....)).)))((((-------------------(.......))))).... ( -18.90) >DroSec_CAF1 276558 114 + 1 CUGUGCGACAGCAACCAUCGCAAUAAUUAUUGCUGACGGGCAGCAAUAACAACAUUAAGGCAACAGCAGCAGUGGGUCACUGGAGAGCCAAGUGAUCACAACAAAUGGCUAAGA ...(((....))).((((.((.....(((((((((.....))))))))).........(....).))....((.(((((((((....)).)))))))...))..))))...... ( -31.00) >DroSim_CAF1 307035 114 + 1 CUGUGCGACAGCAGCCAUCGCAAUAAUUAUUGCUGACGGGCAGCAAUAACAACAUUAAGGCAACAGCAGCAGUGGGUCACUGGAGAGCCAAGUGAUCACAACAAAUGGCUAAGA ....((....))((((((.((.....(((((((((.....))))))))).........(....).))....((.(((((((((....)).)))))))...))..)))))).... ( -35.20) >DroEre_CAF1 290282 114 + 1 CUACGCGACAGCAGCCAUCGCAAUAAUUGUUGCUGACGGGCAGCAGUAACAGCACAAAGGCAACGACUGCAGUGGGUCACUGGAGAGCCAGGAGAUCUCAACAAAUGGCCAAGA .....((.(((((((.((.......)).))))))).))(((.(((((....((......))....))))).(((((((.((((....))))..)))))..)).....))).... ( -35.00) >DroYak_CAF1 286489 114 + 1 CUGCGCGACAGCAGCAAUCGCUAAAAUUAUUGCUGACGGGCAGCAAUAACAACAUAGAGGCACCGACUACAGUGGGUCACUGGAGAGCCAGGUGAUCACAACAAAUGGCUAAAA ((((......)))).....((((...(((((((((.....))))))))).......((..((((((((......))))..(((....))))))).))........))))..... ( -32.10) >consensus CUGUGCGACAGCAGCCAUCGCAAUAAUUAUUGCUGACGGGCAGCAAUAACAACAUAAAGGCAACAACAGCAGUGGGUCACUGGAGAGCCAAGUGAUCACAACAAAUGGCUAAGA ....((....))(((((((((.....(((((((((.....))))))))).........(....).......)))(((((((((....))).)))))).......)))))).... (-21.25 = -23.22 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:49 2006