Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,511,508 – 6,511,627 |
Length | 119 |
Max. P | 0.735678 |
Location | 6,511,508 – 6,511,627 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.31 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -16.75 |
Energy contribution | -17.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -2.09 |
Structure conservation index | 0.67 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6511508 119 + 27905053 AUUUGACACUUACUGGCCCCAAAAACUAUUUAAACAACAGUUUCCUAAGGAAAUCCU-AUGGCAUUCGAUUGCUGUAAACGUGAAUAACAAUCAUCGCGGAAAUAGUUUUAAAAGGGAAU ................(((..((((((((((........((((((...))))))..(-((((((......)))))))..(((((..........))))).))))))))))....)))... ( -24.50) >DroSim_CAF1 306586 119 + 1 AUUUGACACUUACAGGCCCCAAAAACUAUUUAAACAACAGUUUCCUAAGGAAAUCCU-AUGUAAUUCGAUUUCUGUAAACGUGAAUAACAACCAUCGCGGAAAUAGUUUUAAAAGGGAAU ................(((..((((((((((.................(((((((..-.........))))))).....(((((..........))))).))))))))))....)))... ( -20.30) >DroEre_CAF1 289838 119 + 1 AUUCGGCACAUACUGCCCCCAAAAAAUAUUUAAGCAACAGCUUCCAAAGGAAAUCCA-AUACAACUCGAUUUCUGUACACGCGAAUGACAAGCAUCGCGGAAGUUGGUUUAUAAGGGAAU ....((((.....))))(((..........(((((..((((((((...(((((((..-.........)))))))......((((.((.....)))))))))))))))))))...)))... ( -30.42) >DroYak_CAF1 286069 120 + 1 AUUUGACACAUACUGCCCCCAAAAACUAUUUAAACAACAGUUUCCAAAGAAAAUCCAAAUACAACGCGAUUUCUGUAAACGUGAGUAACAAUCAUCGCGGAAAUAGUUUUAAAAGGGAAU ...............(((...((((((((((.........((((....))))............((((((...(((..((....)).)))...)))))).))))))))))....)))... ( -24.10) >consensus AUUUGACACAUACUGCCCCCAAAAACUAUUUAAACAACAGUUUCCAAAGGAAAUCCA_AUACAACUCGAUUUCUGUAAACGUGAAUAACAAUCAUCGCGGAAAUAGUUUUAAAAGGGAAU ................(((..((((((((((((((....)))).....(((((((............))))))).....(((((..........))))).))))))))))....)))... (-16.75 = -17.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006