Locus 2291

Sequence ID 3R_DroMel_CAF1
Location 6,510,945 – 6,511,053
Length 108
Max. P 0.534001
window3704

overview

Window 4

Location 6,510,945 – 6,511,053
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 95.46
Mean single sequence MFE -31.13
Consensus MFE -28.12
Energy contribution -27.92
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.14
Structure conservation index 0.90
SVM decision value 0.00
SVM RNA-class probability 0.534001
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6510945 108 - 27905053
AUGGUAAGUGUGCGGUUACCAGCGCUUGUUAACCGUUUGCUUCCCGCUUACAUAAUUCAAUUAGGGCCUCGGCUAUAAUGGAGAUAAUUUCUGGGUGCCCAAUAAAAG
..((.(((((.(((((((.(((...))).))))))).))))).))..................(((((((((..((.((....)).))..))))).))))........ ( -28.40)
>DroSec_CAF1 275613 108 - 1
ACGGUAAGUGUGCGGUUGCCAGCGCUUGUUAACCGUUUGCUUCCCGCUUACAUAAUUCAAUUAGGGCCUCGGCUAUAAUGGAGAUAAUUUCUGGGAGCCCAAUAAAAG
.(((.(((((.(((((((.(((...))).))))))).))))).))).................(((((((((..((.((....)).))..))))).))))........ ( -29.70)
>DroSim_CAF1 306034 108 - 1
ACGGUAAGUGUGCGGUUGCCAGCGCUUGUUAACCGUUUGCUUCCCGCUUACAUAAUUCAAUUAGGGCCUCGGCUAUAAUGGAGAUAAUUUCUGGGAGCCCAAUAAAAG
.(((.(((((.(((((((.(((...))).))))))).))))).))).................(((((((((..((.((....)).))..))))).))))........ ( -29.70)
>DroEre_CAF1 289305 108 - 1
GCGGUAAGUGUGCGGUUACCACCGCUUGUUAACCGUUUGCUUCCCGCUUACAUAAUUCAAUUAGGGCCUCGGCCAUAAUGGAGAUCAUUGCUGGCAGCCCAAUAAAAG
((((.(((((.(((((((.((.....)).))))))).))))).))))................((((....(((((((((.....))))).)))).))))........ ( -37.70)
>DroYak_CAF1 285538 108 - 1
ACGGUAAGUGUGCGGUUACCAACGCUUGUUAACCGUUUGCUUCCCGCUUACAUAAUUCAAUUAGGGCCUCGGCUUUAAUGGAGAUAAUUUCUGGGAGCCCGAUAAAAG
.(((..((((.(((((((.((.....)).))))))).))))(((((.........((((.(((((((....))))))))))).........)))))..)))....... ( -30.17)
>consensus
ACGGUAAGUGUGCGGUUACCAGCGCUUGUUAACCGUUUGCUUCCCGCUUACAUAAUUCAAUUAGGGCCUCGGCUAUAAUGGAGAUAAUUUCUGGGAGCCCAAUAAAAG
.(((.(((((.(((((((.((.....)).))))))).))))).))).................(((((((((....(((.......))).))))).))))........ (-28.12 = -27.92 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:45 2006