Locus 2289

Sequence ID 3R_DroMel_CAF1
Location 6,507,693 – 6,507,794
Length 101
Max. P 0.587247
window3701

overview

Window 1

Location 6,507,693 – 6,507,794
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 86.18
Mean single sequence MFE -22.37
Consensus MFE -16.38
Energy contribution -16.82
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.65
Structure conservation index 0.73
SVM decision value 0.11
SVM RNA-class probability 0.587247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6507693 101 + 27905053
GAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACAAAUUUUUGGAAACUGGCAACUUAAUUAUGUUUAUGUGCUCAGUUAAGA-GGGCAACUUUAAUUAUC
(((((......)))))..((((((((((((((..(((....)))..)))))))................(((.(((......))-).)))...))))))).. ( -23.70)
>DroSec_CAF1 272692 102 + 1
GAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACCAACUUUUGGAAACUGGCAACUUAAUUAUGUUUAUGAGCUCAAUUAAGAAGGGCAACUUUAAUUAUC
(((((......))))).........(((((((..(((.....))).)))))))..(((((((..(((....)))..)))))))((((....))))....... ( -22.70)
>DroSim_CAF1 302889 102 + 1
GAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACAAACUUUUGGAAACUGGCAACUUAAUUAUGUUUAUGUGCUCAAUUAAGAAGGGCAACUUUAAUUAUC
(((((((((((........((((..(((((((..(((....)))..))))))))))).......))))).)))))).......((((....))))....... ( -23.36)
>DroEre_CAF1 286130 88 + 1
GAGUAUUGGAAUAUUCAUUAGUUGGGCUGGUUAACAAACUUUUGGAAACUGGCAACUCAAUUAAGUUUA--------------GUGGGCACGGUUAAUUAUC
((((((....)))))).((((((((((..(((..(((....)))..)))..))...)))))))).....--------------................... ( -17.10)
>DroYak_CAF1 282306 102 + 1
GAGUACUGGAAUAUUCAUUAGUUAAGCUGGUUAACAAACUUUUGGAAACUGGCAACUUAAUUAAGUUUAUGUGCUCAGUUGGUGAGGGCACCUUUAAUUAUC
((((((..((((.....((((((((((..(((..(((....)))..)))..))...))))))))))))..))))))....((((....)))).......... ( -25.00)
>consensus
GAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACAAACUUUUGGAAACUGGCAACUUAAUUAUGUUUAUGUGCUCAAUUAAGAAGGGCAACUUUAAUUAUC
(((((......)))))..((((((((((((((..(((....)))..)))))))...................((((.........))))....))))))).. (-16.38 = -16.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:42 2006