Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,503,995 – 6,504,107 |
Length | 112 |
Max. P | 0.819043 |
Location | 6,503,995 – 6,504,107 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.95 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -17.21 |
Energy contribution | -18.77 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.65 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6503995 112 + 27905053 GUAGUGCUCUGCAGUACUUAGAAAGUGCUUCACCUACUUUGAAUUCAUGAUAAAUUAUCU-UCUAUCAACUUACCCUUGCUGACUUGCAUUGGCGUGAAGCUGGACUGCGGAU .......(((((((((((.....)))(((((((..............(((((........-..))))).....((..(((......)))..)).)))))))...)))))))). ( -28.90) >DroSec_CAF1 269074 113 + 1 CUAGUACUCUGCAGUACUUACAAAGUGCUUCACCUACUUUAAAUUCAUGAUAAAUAAUUUGUUUAUCAACUUACCCUUGCUGACUUGCAUUGGCGUGAAGCUGGACUGCGGAU .......(((((((((((.....)))(((((((..............((((((((.....)))))))).....((..(((......)))..)).)))))))...)))))))). ( -33.00) >DroEre_CAF1 282244 92 + 1 CUACUACUCUGCAGUACU--------------------UUAAAUUCAUGAUAAAUAGUAU-UUUAUGAACUCACCCUUGCUGACUUGCAUUGGCGUGAAGCUGGACUGCGGAU .......((((((((...--------------------.....(((((((..........-.))))))).((((((.(((......)))..)).))))......)))))))). ( -25.50) >DroYak_CAF1 278281 91 + 1 CUACUACUGUGCAGUACU---------------------UAGAUAAUUGAGAAAUGUUUU-UGUAAGAACUUACCCUUGCUGACUUGCAUCGGCGUGAAGCUGGACUGCGGAU .......(.((((((.((---------------------(((....)))))....(((..-.(((((........))))).))).....(((((.....))))))))))).). ( -18.90) >consensus CUACUACUCUGCAGUACU____________________UUAAAUUCAUGAUAAAUAAUUU_UUUAUCAACUUACCCUUGCUGACUUGCAUUGGCGUGAAGCUGGACUGCGGAU .......((((((((................................(((((((.......)))))))..((((((.(((......)))..)).))))......)))))))). (-17.21 = -18.77 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:39 2006