Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,499,505 – 6,499,599 |
Length | 94 |
Max. P | 0.943258 |
Location | 6,499,505 – 6,499,599 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 72.93 |
Mean single sequence MFE | -29.32 |
Consensus MFE | -9.92 |
Energy contribution | -9.64 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.46 |
Mean z-score | -2.08 |
Structure conservation index | 0.34 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6499505 94 + 27905053 --------ACUUUUCUAGGACCAUUUGAUUGUUGAUUAGGUGGACUUUGAGCCCCCCAAAAAGUACCCCUUCCUUCAGGGGGACACCCCUGACAAGCGUCUC --------........((((((((((((((...))))))))))(((((...........)))))......))))(((((((....))))))).......... ( -26.20) >DroSec_CAF1 262980 97 + 1 CAUAGGGACCUUGUCUAGGACCAUUCGAUUCAUACAUAGGAGGGCUUUGAGCCCCCCAAAAAGUACCCUUUCC-----GGGGACACCCCUGACAAGCGUCUC ....(((((((((((.(((...................((.((((.....)))).)).....((.((((....-----))))))...))))))))).))))) ( -35.00) >DroSim_CAF1 292371 97 + 1 CAUAGGGACCUUUUCUAAGACCAUUCAAUUAAUACAUAGAAGGGCUUUGAGCCCCCCAAAAAGUACCCCUUCA-----GGGGACACCCCUGACAAGCGUCUC ....((((((((.((.......................((((((((((...........))))...))))))(-----((((...))))))).))).))))) ( -24.40) >DroEre_CAF1 276093 92 + 1 AGCAAUGACCCUCCCUAGGACCACUGGUUUCAGGCUUGGGGGGACCCUG--CCCC-C-AAAAGGACCCCUCCA-----AG-GACACCCCUGACAAGCGUCUC ......(((.((.(((..((((...))))..)))(((((((((..(((.--....-.-...)))..)))))))-----))-.............)).))).. ( -29.50) >DroYak_CAF1 271940 96 + 1 AAUAGGGUCUUUCUCUAGGACUACUUGUUUCAGGUUUAGGG-UACUUUGGGCCCCCCAUUAAGGACCCCUCCA-----AGGGGCUCCCCUGACAAGCGUCUC ..(((((.....)))))((((..((((..(((((....(((-(.......))))........(((((((....-----.)))).)))))))))))).)))). ( -31.50) >consensus AAUAGGGACCUUCUCUAGGACCAUUCGAUUCAUGCUUAGGAGGACUUUGAGCCCCCCAAAAAGUACCCCUUCA_____GGGGACACCCCUGACAAGCGUCUC .................((((.................(((((........................)))))......((((....)))).......)))). ( -9.92 = -9.64 + -0.28)
Location | 6,499,505 – 6,499,599 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 72.93 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -17.06 |
Energy contribution | -18.70 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.27 |
Mean z-score | -1.83 |
Structure conservation index | 0.50 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6499505 94 - 27905053 GAGACGCUUGUCAGGGGUGUCCCCCUGAAGGAAGGGGUACUUUUUGGGGGGCUCAAAGUCCACCUAAUCAACAAUCAAAUGGUCCUAGAAAAGU-------- ...((.(((.(((((((....)))))))....))).))..((((((((((((.....))))(((................)))))))))))...-------- ( -29.39) >DroSec_CAF1 262980 97 - 1 GAGACGCUUGUCAGGGGUGUCCCC-----GGAAAGGGUACUUUUUGGGGGGCUCAAAGCCCUCCUAUGUAUGAAUCGAAUGGUCCUAGACAAGGUCCCUAUG ..(((.((((((((((.(((.(((-----((((((....)))))))))((((.....)))).................))).)))).)))))))))...... ( -36.20) >DroSim_CAF1 292371 97 - 1 GAGACGCUUGUCAGGGGUGUCCCC-----UGAAGGGGUACUUUUUGGGGGGCUCAAAGCCCUUCUAUGUAUUAAUUGAAUGGUCUUAGAAAAGGUCCCUAUG ..........(((((((...))))-----))).((((.((((((((((((((.....)))))))..........((((......)))))))))))))))... ( -32.70) >DroEre_CAF1 276093 92 - 1 GAGACGCUUGUCAGGGGUGUC-CU-----UGGAGGGGUCCUUUU-G-GGGG--CAGGGUCCCCCCAAGCCUGAAACCAGUGGUCCUAGGGAGGGUCAUUGCU .....(((((...((((((((-((-----..((((....)))).-.-))))--))....)))).))))).......(((((..(((....)))..))))).. ( -39.80) >DroYak_CAF1 271940 96 - 1 GAGACGCUUGUCAGGGGAGCCCCU-----UGGAGGGGUCCUUAAUGGGGGGCCCAAAGUA-CCCUAAACCUGAAACAAGUAGUCCUAGAGAAAGACCCUAUU ..((((((((((((((((.((((.-----....)))))))....(((((..(.....)..-)))))..)))))..))))).))).................. ( -33.50) >consensus GAGACGCUUGUCAGGGGUGUCCCC_____UGAAGGGGUACUUUUUGGGGGGCUCAAAGUCCCCCUAAGCAUGAAUCAAAUGGUCCUAGAAAAGGUCCCUAUG ..(((.(((.(((((((((((((..........))))))))....(((((((.....)))))))...................))).)).))))))...... (-17.06 = -18.70 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:38 2006