Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,498,202 – 6,498,294 |
Length | 92 |
Max. P | 0.508520 |
Location | 6,498,202 – 6,498,294 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.37 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -20.78 |
Energy contribution | -22.38 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.64 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6498202 92 - 27905053 GGUUGGGAUGCCCGGAUGACU-GGAUGC-UGGAUGCCUCGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC ((..((((((....(((((((-.((.((-.....)).)).).).)))))..))))))....))(((((((((((....)))))))).))).... ( -35.00) >DroSec_CAF1 261759 92 - 1 -GUUGGGAUGCCCGGAUGACU-GGAUGCCUGGAUGCCUCGAUGCUCAUCAUCAUCCCUUCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC -..(((((((((((((.((..-(((((....((((.(.....)..))))..)))))..))))))....((((((....))))))))))))))). ( -33.30) >DroSim_CAF1 291059 84 - 1 -GUUGGGAUGCCCGGAUGACU-GGA--------UGCCUCGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC -..(((((((((((((.((..-(((--------((....(((....)))..))))).)).))))....((((((....))))))))))))))). ( -30.90) >DroEre_CAF1 274846 80 - 1 -GUUGG---------AUAGCU-GGACGCCUGGAUGGCUGGAUGCUCAU---CAUCCCUCCUCCGAUGCUGGCGCUCAAGUGUCAGGUGUCUCAC -.....---------......-(((((((((((.((..(((((.....---)))))..)))))((((((........))))))))))))))... ( -29.20) >DroYak_CAF1 270587 92 - 1 -GCUGGGAUGUUGG-GAUGCUGGGAUGACUGGAUGCCUGGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC -..((((((....(-((.(..(((((((...((((.(.....)..)))).)))))))..))))...((((((((....)))))))).)))))). ( -35.10) >consensus _GUUGGGAUGCCCGGAUGACU_GGAUGCCUGGAUGCCUCGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC ...((((((.............(((.....(((((....(((....)))..)))))....)))...((((((((....)))))))).)))))). (-20.78 = -22.38 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:37 2006