Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,476,727 – 6,476,823 |
Length | 96 |
Max. P | 0.822993 |
Location | 6,476,727 – 6,476,823 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 81.84 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -18.24 |
Energy contribution | -19.28 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.05 |
Structure conservation index | 0.65 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6476727 96 - 27905053 ACAAU-UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCAGU-UCGGGUUCUGGUUCUGUUUCAGUUU------------CAGAGCCAGUUGCUCUUUUCCAUGGGCUC .....-....((((..........(((((......)))))...-..((((.(((((((((.........------------)))))))))..)))).......))))... ( -28.80) >DroSec_CAF1 240690 97 - 1 ACAUC-UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCAGGACCAGGUUCGGGUUCUGUUUCAGUUU------------CAGAGCCAGUUGCUCUUCUCCAUGGGCCC .....-....((((..........(((((......))))).(((..((((...(((((((.........------------)))))))....)).))..))).))))... ( -26.60) >DroSim_CAF1 266101 90 - 1 ACAUC-UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCA-------GUUCGGGUUCUGUUUCAGUUU------------CAGAGCCAGUUGCUCUUCUCCAUGGGCCC .....-....((((..........(((((......)))))(-------((...(((((((.........------------)))))))....)))........))))... ( -21.90) >DroEre_CAF1 253926 108 - 1 GCAGC-UACUCCCACAUCCAAUUAGCGCUUCUCUCAGUGCAGC-UCGGCUUCUGGUUCUGGUUCUGCUUCAGUUUCAGUUUCAGUGCCCGUUGCUCUUUUCCAUGGGCCC .....-....((((..........(((((......)))))(((-.(((...((((..((((..(((...)))..))))..))))...)))..)))........))))... ( -29.40) >DroYak_CAF1 248171 109 - 1 ACAGCCUACUCCCACAUCCAAUUAGCGCUUCUUUCAGUGCAGC-UCGGGUUCUGGCUCUGUUUCAGUUUCAGUGGCAGUGGCAGUGCCAGUUGCUCUUUUCCAUGGGCCC ...(((((................(((((......)))))...-..((((.(((((.((((..(.(((.....))).)..)))).)))))..)))).......))))).. ( -33.00) >consensus ACAGC_UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCAGC_UCGGGUUCUGGUUCUGUUUCAGUUU____________CAGAGCCAGUUGCUCUUUUCCAUGGGCCC ..........((((..........(((((......)))))......((((...(((((((.....................)))))))....)))).......))))... (-18.24 = -19.28 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:28 2006