Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,476,412 – 6,476,517 |
Length | 105 |
Max. P | 0.958759 |
Location | 6,476,412 – 6,476,517 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 92.20 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -32.16 |
Energy contribution | -32.24 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.89 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6476412 105 - 27905053 GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU------------AGCAC-ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG ....(((((..((.....))..)))))....------------.((..-....)).((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -35.20) >DroSec_CAF1 240382 105 - 1 GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU------------AGCAC-ACCAGCAGGGUUGGCAGAAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG ....(((((..((.....))..)))))....------------.((..-....)).((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -35.60) >DroSim_CAF1 265792 105 - 1 GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU------------AGCAC-ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGACUUCCAUUUUGUUGGCCCG ...(((((((((((((....((..(((((..------------.(((.-.(((((...)))))...(((....)))..)))....)))))..))....)))))))...)))..))).. ( -30.70) >DroEre_CAF1 253612 105 - 1 GAUGCCACAUGGAGGUAUUUUGUGUGUGUGU------------AGCGC-ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG ((((((.......))))))(((.(((((...------------..)))-)))))..((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -37.40) >DroYak_CAF1 247818 118 - 1 GAUGGCACAUGGAAGUGUUUUGUGUGUAUGUUCUAUAGCCAGCAGGGCAACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG ((..(((((..((.....))..)))))....))........((.((....)).)).((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -41.00) >consensus GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU____________AGCAC_ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG ....(((((..(((...)))..))))).............................((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). (-32.16 = -32.24 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:27 2006