Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,473,180 – 6,473,279 |
Length | 99 |
Max. P | 0.515608 |
Location | 6,473,180 – 6,473,279 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.09 |
Mean single sequence MFE | -24.19 |
Consensus MFE | -19.39 |
Energy contribution | -19.42 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.22 |
Mean z-score | -1.49 |
Structure conservation index | 0.80 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6473180 99 - 27905053 UGCAUACGAAUCAACAAGAUCACUUUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((............((((((((((((..(((((..........)))))..)))).))))))))............)))))).........------------------.....--- ( -22.05) >DroPse_CAF1 242953 118 - 1 UGCAUACAUAUCAA-AAGAUCACUUUGAGGCAUUGACAAACAAAUUUGUCAAGAUCCUGAAAGA-GUUUUCACAUUAAUUAUGUAAAUUGAUCGACUAUUGACUAAGGGCCAUCAAGAUU .((.......((((-..(((((((((.(((..((((((((....))))))))...))).)))).-......((((.....))))....))))).....))))......)).......... ( -23.52) >DroSec_CAF1 237174 99 - 1 UGCAUACGAAUCAAGAAGAUCACUCUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUAGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((............((((((((((((..(((((..........)))))..)))).))))))))............)))))).........------------------.....--- ( -24.65) >DroSim_CAF1 262868 99 - 1 UGCAUACGAAUCAAGAAGAUCACUCUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((..(((...(((.((((((((((((..(((((..........)))))..)))).)))))))).)))..)))...)))))).........------------------.....--- ( -27.50) >DroEre_CAF1 250664 99 - 1 UGCAUACGAGUCGAGAAGAUCGCUCUGGGACAUUGACAGACAAAUUAGUCGAGAUCCUGAGAGUGGUGUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((..(((.(.(((.((((((((((((..(((((..........)))))..)))).)))))))).))).))))...)))))).........------------------.....--- ( -29.20) >DroYak_CAF1 244795 99 - 1 UGCAUACGAGUCAAGACGAUCGCUCUGCGACAUUUACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUGUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- .(((..(((.((.....)))))...)))..........(((......)))......(((.((..((((((..(((.....)))..)).))))..------------------)))))--- ( -18.20) >consensus UGCAUACGAAUCAAGAAGAUCACUCUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUCGCAUUAAUUAUGUAAAUCGCCCA__________________UCCAG___ ((((((............((((((((((((..(((((..........)))))..)))).))))))))............))))))................................... (-19.39 = -19.42 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:26 2006