Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,470,552 – 6,470,657 |
Length | 105 |
Max. P | 0.613041 |
Location | 6,470,552 – 6,470,657 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.60 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -23.62 |
Energy contribution | -24.06 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.55 |
Structure conservation index | 0.78 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6470552 105 - 27905053 GGGAUUUUCUGGGCUGAGGGUUAAGGG-GUGGGCCUUAAUGGCUUCAAAAUUUGGUUGGGGAUUCUUGGGCUGAAUGAUUUAUGCCUUGCCCAGAUUCACAGCAAA ..((...(((((((.((((..((((..-.(.(((((......((((((.......))))))......))))).)....))))..))))))))))).))........ ( -32.70) >DroSec_CAF1 234603 106 - 1 GAGAAGUUGGGGGUUGAGGGUUAAGGGUCUGGGGCUUAAUGGCUUCAAAAUUUGGUUGGGGGUUCUUGGGCUGAAUGAUUUAUGCCUUGCCCAGAUUCACAGCAAA .....((((.(((((..((((.((((...(((((((....)))))))..(((..(((.(((...))).)))..)))........)))))))).))))).))))... ( -32.70) >DroSim_CAF1 260273 106 - 1 GAGAAGUUGGGGGUUGAGGGUUAAGGGUCUGGGCUUUAAUGGCUUCAAAAUUUGGUUGGGGAUUCUUGGGCUGAAUGAUUUAUGCCUUGCCCAGAUUCACAGCAAA .....((((....((((...))))((((((((((......(((......(((..(((.(((...))).)))..))).......)))..)))))))))).))))... ( -31.12) >DroEre_CAF1 247940 99 - 1 GGGAAGUU-------GAGGGUUAAGGGUCUGGGGCUUAAUGGCUUCAAAAUUUGGUUGGGGUUUCUUGGGCUGAAUGAUUUAUGCCUUGCCCAGAUUCACAGCAAA ........-------....(((..(((((((((.(.....(((......(((..(((.(((...))).)))..))).......)))..))))))))))..)))... ( -27.02) >DroYak_CAF1 242217 99 - 1 GGGAAGUU-------GGGGGUUAAGGGUCUGUGGCUUAAUGGCUUCAAAAUUUGGUUGGGGAUUCUUGGGCUGAAUGAUUUAUGCCAUGCCCAGAUUCACAGCAAA ........-------....(((..(((((((.(((...(((((......(((..(((.(((...))).)))..))).......)))))))))))))))..)))... ( -28.82) >consensus GGGAAGUU__GGG_UGAGGGUUAAGGGUCUGGGGCUUAAUGGCUUCAAAAUUUGGUUGGGGAUUCUUGGGCUGAAUGAUUUAUGCCUUGCCCAGAUUCACAGCAAA ...................(((..(((((((((.(.....(((......(((..(((.(((...))).)))..))).......)))..))))))))))..)))... (-23.62 = -24.06 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:25 2006