Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,469,058 – 6,469,149 |
Length | 91 |
Max. P | 0.795560 |
Location | 6,469,058 – 6,469,149 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -19.62 |
Energy contribution | -19.38 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.12 |
Structure conservation index | 0.74 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6469058 91 + 27905053 GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC-------ACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGA--------UAUCAUCUGGGUAU ..(((((((((.((((....)))).)))))))))...(((-------.((((....((((((...................)))--------)))..))))))).. ( -26.51) >DroSec_CAF1 233153 88 + 1 GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC-------ACAGAGACUGUGUCCUGAUCUUGUCAUUAUAUCUGGA--------UA---UCUGGGUAU ..(((((((((.((((....)))).)))))))))...(((-------.((((.....(((((.(((..((....)).))).)))--------))---))))))).. ( -25.40) >DroSim_CAF1 258786 88 + 1 GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC-------ACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGA--------UA---UCUGGGUAU ..(((((((((.((((....)))).)))))))))...(((-------.((((.....(((((...................)))--------))---))))))).. ( -23.41) >DroEre_CAF1 244320 88 + 1 GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUUGCC-------ACAGAGACUGUGUCCUCCUCAUGUCAUUAUAUCUGGA--------UA---UCUGGGUAU ..(((((((((.((((....)))).)))))))))..((((-------.(((((((...))).(((..((((....))))..)))--------..---)))))))). ( -24.80) >DroYak_CAF1 240698 103 + 1 GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUUGCCAUGGAACACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGAUAUCUGGAUA---UCUGGGUAU ..(((((((((.((((....)))).)))))))))..((.((.(((((((((...))))))..)))...)).))..(((((..(((((....)))---))..))))) ( -32.80) >consensus GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC_______ACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGA________UA___UCUGGGUAU (((((((((((.((((....)))).))))))))...))).............(((..............)))...(((((..((.............))..))))) (-19.62 = -19.38 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:24 2006