Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,457,489 – 6,457,592 |
Length | 103 |
Max. P | 0.822723 |
Location | 6,457,489 – 6,457,592 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.05 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -11.14 |
Energy contribution | -13.77 |
Covariance contribution | 2.63 |
Combinations/Pair | 1.15 |
Mean z-score | -2.05 |
Structure conservation index | 0.44 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6457489 103 + 27905053 UAUGGCCAGAA--G-----UUGAGGAGGCCAGGGGCAGG-CACUCCUGGCU------AUAAGA---ACUAACAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAACGGGCCAUAAA (((((((....--(-----(((....(((((((((....-..)))))))))------......---.....((((...((((..(((....)))..)))).)))).)))).))))))).. ( -34.40) >DroVir_CAF1 249090 106 + 1 CAACGUCGACU--ACGACUAC--GACGGCCGGGAACCGGGUACCACUG---------AGAAGAGUGGCCA-AAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAAUGCGCAAUAAA ...(((((...--.......)--)))).((((...))))((((((((.---------.....)))))...-.......((((..(((....)))..)))).........)))........ ( -19.00) >DroSim_CAF1 247280 103 + 1 UAUGGCCAGAA--G-----UUGAGGAGGCCAGGGGCAGG-CACUCCUGGCU------AUAAGA---ACUAACAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAACGGGCCAUAAA (((((((....--(-----(((....(((((((((....-..)))))))))------......---.....((((...((((..(((....)))..)))).)))).)))).))))))).. ( -34.40) >DroEre_CAF1 232832 109 + 1 UAUGGCCAGAA--A-----UCGAGGCGGCCAGGGGCAGG-CACUCCUGGUUACGAGUAAGAGA---ACUAACAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAAGGGGCCAUAAA (((((((....--.-----(((..(..((((((((....-..))))))))..).(((......---)))...............)))(((.(((((.....))))).))).))))))).. ( -31.60) >DroWil_CAF1 326867 88 + 1 CAGAGCAAUAAUGA-----CUGAGACGACAA---ACGGG-GCC-------------------A---GCCA-AAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAAUGGGCAAUAAA (((..((....)).-----))).........---.....-(((-------------------.---....-..((((.((((..(((....)))..)))))))).......)))...... ( -8.54) >DroYak_CAF1 227105 103 + 1 CAGGGCCAGAA--A-----UCGAGGCGGCGAGGGGCAGG-CACUCCUGGCU------AAAAGA---ACUAACAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAACGGGCCAUAAA ...((((....--.-----(((((..(((.(((((....-..))))).)))------......---............((((..(((....)))..)))).))))).....))))..... ( -24.60) >consensus CAUGGCCAGAA__A_____UCGAGGCGGCCAGGGGCAGG_CACUCCUGGCU______AAAAGA___ACUAACAAAAUAUAUUAAUGACUUAUCAAGGAUAAUUUGACAACGGGCCAUAAA ...((((...................(((((((((.......)))))))))...........................((((..(((....)))..))))...........))))..... (-11.14 = -13.77 + 2.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:23 2006