Locus 2273

Sequence ID 3R_DroMel_CAF1
Location 6,454,516 – 6,454,621
Length 105
Max. P 0.962806
window3680

overview

Window 0

Location 6,454,516 – 6,454,621
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 90.29
Mean single sequence MFE -23.58
Consensus MFE -19.66
Energy contribution -20.02
Covariance contribution 0.36
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.83
SVM decision value 1.54
SVM RNA-class probability 0.962806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6454516 105 + 27905053
AAAAAACUUUUGGCCCGUAUGGAAGUUGCACUAUUUCGCAGACAGAUUUUCCAGCCAGCGAACUGGUGUAAUUUAAUCAAAGUUAUAAAAAGUUUUAAUUUGAUU
..(((((((((...((....))(((((((((((.(((((..................))))).))))))))))).............)))))))))......... ( -23.37)
>DroSec_CAF1 218336 105 + 1
AAAAAACUUUUGGCCCGUAUGGAAGUUGCACUAUUUCGCAGACAGAUUUUCCAGCCAGCGAACUGGUGUAAUUUAAUCAAAGUUAUAAAAAGUUUUAAUUUGAUU
..(((((((((...((....))(((((((((((.(((((..................))))).))))))))))).............)))))))))......... ( -23.37)
>DroSim_CAF1 244387 105 + 1
AAAAAACUUUUGGCCCGUAUGGAAGUUGCACUAUUUCGCAGACAGAUUUUCCAGCCAGCGAACUGGUGUAAUUUAAUCAAAGUUAUAAAAAGUUUUAAUUUGAUU
..(((((((((...((....))(((((((((((.(((((..................))))).))))))))))).............)))))))))......... ( -23.37)
>DroEre_CAF1 229960 90 + 1
AAAAAACUUUU---------------UGCACUGUUUCGCAGGCAGAUGUUCCAUCCAGUGAACUGGUGUGAUUUAAUCAAAGUUAUAAAAAGUUUUAAUUUGAUU
..(((((((((---------------(((.(((.....))))).(((..((((.((((....)))))).))....)))........))))))))))......... ( -22.80)
>DroYak_CAF1 224025 105 + 1
AAAAAACUUUUGGCCCGCAUGGAAGUUGCGAUAUUUCGCAGACAGAUAUUCCAGCCAGCGAACUGGUGUAAUUUAAUCAAAGUUGUAAAAAGUUUUAAUUUGAUU
..(((((((((.((..((.(((((.((((((....)))))).......)))))(((((....)))))..............)).)).)))))))))......... ( -25.00)
>consensus
AAAAAACUUUUGGCCCGUAUGGAAGUUGCACUAUUUCGCAGACAGAUUUUCCAGCCAGCGAACUGGUGUAAUUUAAUCAAAGUUAUAAAAAGUUUUAAUUUGAUU
..(((((((((...........(((((((((((.(((((..................))))).))))))))))).............)))))))))......... (-19.66 = -20.02 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:22 2006