Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,454,082 – 6,454,193 |
Length | 111 |
Max. P | 0.812329 |
Location | 6,454,082 – 6,454,193 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.28 |
Mean single sequence MFE | -28.67 |
Consensus MFE | -17.55 |
Energy contribution | -19.68 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.32 |
Mean z-score | -1.93 |
Structure conservation index | 0.61 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6454082 111 + 27905053 UGUACGUGUUUCCAUGGGUUUGGGUGAACUACACUCAGAGAAGAUGGAAUGUGUUACACUAAAUAUAUUCAAUUUAUAACUUCCAUGGUUUUGUUA-UAAAAUAGCAUUUAA ...........(((((((((((((((.....))))))))..((((.(((((((((......))))))))).))))......)))))))...(((((-(...))))))..... ( -27.00) >DroSec_CAF1 217921 111 + 1 UGUACGUUUUUCCAUGGGUUUGGGUGAAGUGCACUCAGAGAAGAUGGAAAGUAUAACGCUAAAUAUAUUCUAUCUAGAACUUCCAUGGUUUUGUUA-UAAAACUCCAUUAAA .....(((((.(((((((((((((((.....))))))))..((((((((.((((........)))).))))))))......)))))))........-.)))))......... ( -28.30) >DroSim_CAF1 243968 111 + 1 UGUACGUGUUUUCAUGGGUUUGGGUGAAGUGCACUCAGAGAAGAUGUAAAGUGUUACACUAAAUAUUUCCUAUUUAAAACUUCCAUGGUUUUGUUA-UAAAACGCCAUUAAA .....(((((((.(((((((((((((.....))))))))..((((((..((((...))))..))))))))))).(((((((.....)))))))...-.)))))))....... ( -23.40) >DroEre_CAF1 229532 106 + 1 UGGACGUGCAUCCACGGGUUUGGCUGCACUGCACUCAGCGAAGAUGGGAGUGGUAACUC--AGCAUC----GGAUACAACUUUCAUGGUUGUGUCAAAAAAAUCGCCUUUUA .....(((((.(((......))).)))))........((((.((((.((((....))))--..))))----.(((((((((.....))))))))).......))))...... ( -36.00) >consensus UGUACGUGUUUCCAUGGGUUUGGGUGAACUGCACUCAGAGAAGAUGGAAAGUGUAACACUAAAUAUAUUCUAUUUAAAACUUCCAUGGUUUUGUUA_UAAAACACCAUUAAA ...........(((((((((((((((.....))))))))..(((((((((((((........)))))))))))))......)))))))........................ (-17.55 = -19.68 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:21 2006