Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,439,463 – 6,439,556 |
Length | 93 |
Max. P | 0.602784 |
Location | 6,439,463 – 6,439,556 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.63 |
Mean single sequence MFE | -16.96 |
Consensus MFE | -12.39 |
Energy contribution | -12.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.06 |
Structure conservation index | 0.73 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6439463 93 - 27905053 UUAU-------------AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA ....-------------.....(((((......)))))...........--..(((((((((....(((.((((.....))))))))))))))))............. ( -13.90) >DroGri_CAF1 258666 100 - 1 UGCU------UAAAAAAAAAUUGACAAGUU--UUUGGUUUUUUGUAGUAUAUUAUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAGAAGCAA ((((------(...(((((((..(......--.)..))))))).........((((((((((....(((.((((.....)))))))))))))))))(....)))))). ( -22.20) >DroEre_CAF1 214867 93 - 1 UUAU-------------AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA ....-------------.....(((((......)))))...........--..(((((((((....(((.((((.....))))))))))))))))............. ( -13.90) >DroYak_CAF1 208476 93 - 1 UUAU-------------AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA ....-------------.....(((((......)))))...........--..(((((((((....(((.((((.....))))))))))))))))............. ( -13.90) >DroMoj_CAF1 273985 89 - 1 UGCUGGAUUG-------------ACAAGCU--UUUGGUUUUUCAUAGUAUAUUAUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGA----AGCAA ((((....((-------------(.((((.--....)))).)))........((((((((((....(((.((((.....)))))))))))))))))...----)))). ( -20.10) >DroAna_CAF1 197025 86 - 1 ------------------UUUCAACUGUUUCAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAG-AAGCA- ------------------........(((((.(((((............--..(((((((((....(((.((((.....))))))))))))))))))))))-)))).- ( -17.73) >consensus UUAU_____________AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA__ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA .....................................................(((((((((....(((.((((.....))))))))))))))))............. (-12.39 = -12.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:20 2006