Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,428,707 – 6,428,803 |
Length | 96 |
Max. P | 0.761129 |
Location | 6,428,707 – 6,428,803 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -17.51 |
Energy contribution | -17.91 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.77 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6428707 96 + 27905053 CAGGACACUUCCUGCCCUACAAAAUGCAAAUGAGCAGCUGUCUCUCGAUCUGUAUCUAUGU--CUAUAUCGAUUGCUCUGGGCAAGUACAAAUCCUGA (((((.....(.(((((.(((...(((......)))..)))....(((((.((((......--..)))).)))))....))))).)......))))). ( -22.40) >DroSec_CAF1 192353 92 + 1 CAGGACACUUCCUGCCCUACAACAUGCAAAUGAGCAGCUGCCACUCGAUCUGUAUCUAU------AUAUCGGUUGCUCUGAGCAACUACAAAUCCUGA (((((....)))))..........(((....(((((((((......(((....)))...------....)))))))))...))).............. ( -20.22) >DroSim_CAF1 217585 92 + 1 CAGGACACUUCCUGCCCUACAACAUGCAAAUGAGCAGCUGUCACUCGAUCUGUAUCUAU------AUAUCGGUUGCUCUGAGCAACUACAAAUCAUGA (((((....)))))..........(((....(((((((((......(((....)))...------....)))))))))...))).............. ( -20.92) >DroEre_CAF1 203784 92 + 1 CAGGACGCUUCCUGCCCUACAAUAUGCAAAUGAGCAGCUGUCUUUCGAUCUCUAUCUAU------AUAUCGGUUGCUCUGGGCAACUAGGAAUCCUGA (((((..(((..(((((..............(((((((((......(((....)))...------....))))))))).)))))...)))..))))). ( -28.98) >DroYak_CAF1 197318 98 + 1 CAGGACACUUCCUGCCCUACAAAAUGCAAAUGAGCAGCUGUCUCUCGAUCUCUAUCUAUAUACAUAUAUCGGUUGCUCUGGCCAACUGUGAAUCUUGA (((((....)))))...((((....((....(((((((((......(((....)))((((....)))).)))))))))..))....))))........ ( -20.50) >consensus CAGGACACUUCCUGCCCUACAAAAUGCAAAUGAGCAGCUGUCUCUCGAUCUGUAUCUAU______AUAUCGGUUGCUCUGGGCAACUACAAAUCCUGA (((((....)))))..........(((....(((((((((.............................)))))))))...))).............. (-17.51 = -17.91 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:19 2006