Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 910,718 – 910,811 |
Length | 93 |
Max. P | 0.979143 |
Location | 910,718 – 910,811 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -54.13 |
Consensus MFE | -45.24 |
Energy contribution | -45.13 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.58 |
Structure conservation index | 0.84 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 910718 93 + 27905053 AG---CCAGUUGAUCCCACUGGCCGGCGGCUGCGGCGGCUAUCGAGGCCUGGGCCGCAGCUGCCGCCGCUGAGUUGGCUGCAUGGCUCUGG------------CUCUG ((---((((...........((((((((((((((((((((.....))))...))))))))))))((.(((.....))).))..))))))))------------))... ( -51.40) >DroSim_CAF1 4907 87 + 1 AG---CCAGCUGAUCCCACUGGCCGGCGGCUGCGGCGGCUAUCGAGGCCUGUGCCGCAGCUGCUGCCGCUGAGUGGGCUGCAUGGCUCC------------------G ((---(((((....((((((((((((((((((((((((((.....))))...)))))))))))))..))).))))))..)).)))))..------------------. ( -53.80) >DroYak_CAF1 12751 108 + 1 AGCCGCCAGCUGAUCCCACUGGCCGGCGGCUGCGGCGGCUAUCGAGGCCUGGGCCGCAGCAGCCGCCGCUGAGUUGGCUGCAUGGCUCUGGCUCUGACUCUGGCUCUG (((((((.(((.........))).)))))))(((((((((.....(((....))).....))))))))).((((..(...((.(((....))).))...)..)))).. ( -57.20) >consensus AG___CCAGCUGAUCCCACUGGCCGGCGGCUGCGGCGGCUAUCGAGGCCUGGGCCGCAGCUGCCGCCGCUGAGUUGGCUGCAUGGCUCUGG____________CUCUG ......((((..((..((.((((.((((((((((((((((.....))))...)))))))))))))))).)).))..))))............................ (-45.24 = -45.13 + -0.11)
Location | 910,718 – 910,811 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -48.47 |
Consensus MFE | -37.65 |
Energy contribution | -37.77 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.15 |
Structure conservation index | 0.78 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 910718 93 - 27905053 CAGAG------------CCAGAGCCAUGCAGCCAACUCAGCGGCGGCAGCUGCGGCCCAGGCCUCGAUAGCCGCCGCAGCCGCCGGCCAGUGGGAUCAACUGG---CU ...((------------((((.((......))...((((..((((((.((((((((...(((.......))))))))))).))).)))..)))).....))))---)) ( -45.80) >DroSim_CAF1 4907 87 - 1 C------------------GGAGCCAUGCAGCCCACUCAGCGGCAGCAGCUGCGGCACAGGCCUCGAUAGCCGCCGCAGCCGCCGGCCAGUGGGAUCAGCUGG---CU .------------------..(((((.((..((((((....(((.((.((((((((...(((.......))))))))))).))..)))))))))....)))))---)) ( -46.30) >DroYak_CAF1 12751 108 - 1 CAGAGCCAGAGUCAGAGCCAGAGCCAUGCAGCCAACUCAGCGGCGGCUGCUGCGGCCCAGGCCUCGAUAGCCGCCGCAGCCGCCGGCCAGUGGGAUCAGCUGGCGGCU ...((((.((((..(...((......))...)..))))..((((((((((.(((((.............))))).))))))))))((((((.......)))))))))) ( -53.32) >consensus CAGAG____________CCAGAGCCAUGCAGCCAACUCAGCGGCGGCAGCUGCGGCCCAGGCCUCGAUAGCCGCCGCAGCCGCCGGCCAGUGGGAUCAGCUGG___CU ......................(((.....(((........)))(((.((((((((...(((.......))))))))))).))))))((((.......))))...... (-37.65 = -37.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:11 2006