Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,422,852 – 6,422,943 |
Length | 91 |
Max. P | 0.534116 |
Location | 6,422,852 – 6,422,943 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 84.48 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -21.80 |
Energy contribution | -21.88 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -1.83 |
Structure conservation index | 0.74 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6422852 91 - 27905053 GCGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCUUUUCGUAUACCCC ((((..((((((...........(((....))).......((((.((((((.....)))))).)))))))))))))).............. ( -31.20) >DroPse_CAF1 186460 79 - 1 GAGGCUGGCGCCGAGGCACGCAACAUUC------AAAUAAUAUAAUGUGGCUACGUGCUGCAAUUUAGGCGCCUC------CAUGCCACCC ..(((.((((((..((((((..(((((.------.........))))).....))))))........))))))..------...))).... ( -26.50) >DroSec_CAF1 186592 91 - 1 GCGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCUCUUCGUAUCCCCC ((((..((((((...........(((....))).......((((.((((((.....)))))).)))))))))))))).............. ( -31.20) >DroSim_CAF1 210698 91 - 1 GCGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCUCUUCGUAUCCCCC ((((..((((((...........(((....))).......((((.((((((.....)))))).)))))))))))))).............. ( -31.20) >DroAna_CAF1 182717 91 - 1 GAGGCUGGCGCCGUGGCACGCAACAUCGAAAUGAAAAUAAUAUAAUGUGGCUACGUGCGGCAAUUUAGGCGCCUCGCUUCUUACAUCCCCC (((((.(((((((((((.((((........((....)).......)))))))))(.....)......))))))..)))))........... ( -29.46) >DroPer_CAF1 193771 79 - 1 GAGGCUGGCGCCGAGGCACGCAACAUUC------AAAUAAUAUAAUGUGGCUACGUGCUGCAAUUUAGGCGCCUC------CAUGCCACCC ..(((.((((((..((((((..(((((.------.........))))).....))))))........))))))..------...))).... ( -26.50) >consensus GAGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCU_UUCAUAUCCCCC ......(((((((((((.((((.......................)))))))))(.....)......)))))).................. (-21.80 = -21.88 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:11 2006