Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,420,366 – 6,420,458 |
Length | 92 |
Max. P | 0.587265 |
Location | 6,420,366 – 6,420,458 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 69.73 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -11.84 |
Energy contribution | -12.24 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.66 |
Structure conservation index | 0.47 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6420366 92 - 27905053 AUCA---------UUGUUGCAGGAGCUGCAGGAGACACACAGCUUUUGUUGAAAACAG---CUAGCUU-------UAUAGCUGAUGUCUUGCAGUAUUCC----AA-GUGCAUAGU ...(---------((((.(((((((((((((((.(....((((....))))....(((---(((....-------..)))))).).)))))))))..)))----..-.)))))))) ( -31.10) >DroSec_CAF1 184154 93 - 1 AUCA---------UUGUUGCAGGAGCUGCAGGAGACACAAAGCUUUUGUUGAAAACAG---CUAGCUU-------UCUAGCCGAU----UGGAGAAUGCCUCACAGUAUCCCAAGU .((.---------.(((((((((((((...(....)....)))))))))....))))(---((((...-------.))))).))(----(((.((.(((......))))))))).. ( -23.40) >DroSim_CAF1 208229 92 - 1 AUCG---------UAGUUGCAGGAACUGCAGGAGACACAAAGCUUUUGUUGAAAACAG---CUAGCUU-------UCUAGCUGAU----UGGAGAAUGCCUCACAA-AUCACAAGU ...(---------(((((.....)))))).(....)........(((((.((...(((---((((...-------.))))))).(----(((((.....))).)))-.))))))). ( -23.40) >DroEre_CAF1 195441 104 - 1 AUCAUAGUAGUCAUAGUUGCAGGAGCUGUGGGAGACACAAAGCUUUUGUUAAGAACAAAGCAUAGCUGAUUGGAGAAUGUCUAA-------CAGUAUCCA----AA-UGGCGCAGU ......((.(((((.((((((((((((.(((....).)).)))))))))....)))........((((.(((((.....)))))-------)))).....----.)-))))))... ( -26.40) >DroYak_CAF1 188602 85 - 1 AUCA---------CAGUUGCAGGAGCUGUGGGAGACACAAAGCUUUUAUGGGGAACAG---CUAGCUU-------UAUAGCUAA-------CAGUAUCCG----AA-GUGCAUAGU ....---------....((((((((((.(((....).)).)))))))...(((.((.(---.(((((.-------...))))).-------).)).))).----..-..))).... ( -22.00) >consensus AUCA_________UAGUUGCAGGAGCUGCAGGAGACACAAAGCUUUUGUUGAAAACAG___CUAGCUU_______UAUAGCUGAU____UGCAGUAUCCC____AA_AUGCAAAGU ...............((((((((((((...(....)....)))))))))....)))......(((((...........)))))................................. (-11.84 = -12.24 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:10 2006