Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,419,403 – 6,419,506 |
Length | 103 |
Max. P | 0.963519 |
Location | 6,419,403 – 6,419,506 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 91.64 |
Mean single sequence MFE | -31.53 |
Consensus MFE | -28.03 |
Energy contribution | -27.27 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.19 |
Mean z-score | -2.95 |
Structure conservation index | 0.89 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6419403 103 - 27905053 GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGGUUGACUAGGACAGCUGGUCGCAGUGUGCUGUACAGAGGGGGAAAAAGCUCUGAAUAGAAAA-AACUAUGGAU .....(((..((((((..(...(((((......))))).)..))))))..)))(((...((((.(((((..........))))).))))....-.)))...... ( -29.40) >DroSec_CAF1 183189 103 - 1 GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGUUCGACCAGGACAGCUGGCCGUAGUCUGUUGUACAGAGGGGAAAAAACCUCUGAAUAGAAAA-AACUAUAAAU .......(((((((((.....(.((((......)))))....)))))))))(((((.(.((((.((((((........)))))).))))...)-.))))).... ( -33.20) >DroSim_CAF1 207275 104 - 1 GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGUUCGACCAGGACAGCUGGCCGUAGUCUGUUGUACAGAGGGGAAAAAACCUCUGAAUAGAAAAUAAGUAUGGAU .......(((((((((.....(.((((......)))))....)))))))))....((((((...((((((........)))))))))))).............. ( -32.00) >consensus GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGUUCGACCAGGACAGCUGGCCGUAGUCUGUUGUACAGAGGGGAAAAAACCUCUGAAUAGAAAA_AACUAUGGAU ....((((((((((((.....(.((((......)))))....)))))))))))).....((((.((((((........)))))).))))............... (-28.03 = -27.27 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:09 2006