Locus 2263

Sequence ID 3R_DroMel_CAF1
Location 6,413,093 – 6,413,198
Length 105
Max. P 0.532726
window3666

overview

Window 6

Location 6,413,093 – 6,413,198
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -22.81
Consensus MFE -16.26
Energy contribution -17.15
Covariance contribution 0.89
Combinations/Pair 1.22
Mean z-score -1.79
Structure conservation index 0.71
SVM decision value -0.00
SVM RNA-class probability 0.532726
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6413093 105 - 27905053
UUAUCAGUGACGGCGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCUGUAGGCCCGUUGCUCUUUUUAUCAUAUUUUUGCAAUUCGUUGUUGUUGUU---UUUU
....(((..((((((((.....(((((......))))).......))))))...(((..(((((..................)))))..)))))..)))..---.... ( -20.07)
>DroSec_CAF1 176877 101 - 1
UUAUCAGCGACGGCGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCUGUAGGCCCGUUGUUCUUUUUAUCAUAUUUUUGCAAUUCGUUGUUGUU-------UUU
....(((((((((((((.....(((((......))))).......)))))((((((.....((..........))....))))))...))))))))..-------... ( -20.10)
>DroSim_CAF1 200963 103 - 1
UUAUCAGCGACGGCGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCUGCAGGCCCGUUGCUCUUUUUAUCAUAUUUUUGCAAUUCGUUGUUGCUGU-----UUU
....((((((((((((......(((((......))))).......(((((.((((.....))))..................))))))))))))))))).-----... ( -25.71)
>DroEre_CAF1 188222 107 - 1
UUAUCAGCGGCGGCGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCUGCAGGCCCGUUGCUCUUUUUAUCAUAUUUUUGCCAUUU-UUGUUGCUGUUCUUUUUU
....(((((((((((((.....(((((......))))).......)))))))).(((.........................)))....-....)))))......... ( -24.41)
>DroYak_CAF1 181131 100 - 1
UUAUCAGCGGCGGCGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCCGCCAGCCCGUUGCUCUUUUUAUCAUAUUUUUGCAAUUU-UUGUUGCUGUU-------
....(((((((((((((.....(((((......))))).......))))))))).....(((((..................)))))..-.....))))..------- ( -30.67)
>DroAna_CAF1 173966 83 - 1
UUAUCAUCGGCGACGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCAGC----------CUUUUUUAAUCAU-------CGAUUU-UGGUUGUUGUU-------
........(((..((((.....(((((......))))).......))))..))----------).....((((((.-------......-)))))).....------- ( -15.90)
>consensus
UUAUCAGCGACGGCGACAAAUUUGACAUUGUCCUGUCAUAAACCAGUUGCUGCAGGCCCGUUGCUCUUUUUAUCAUAUUUUUGCAAUUC_UUGUUGCUGUU____UUU
....(((((((((((((.....(((((......))))).......))))))........(((((..................))))).....)))))))......... (-16.26 = -17.15 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:08 2006