Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,411,316 – 6,411,435 |
Length | 119 |
Max. P | 0.933867 |
Location | 6,411,316 – 6,411,435 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.32 |
Mean single sequence MFE | -31.65 |
Consensus MFE | -30.43 |
Energy contribution | -30.43 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.15 |
Structure conservation index | 0.96 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6411316 119 - 27905053 UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40) >DroEre_CAF1 186426 119 - 1 UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40) >DroYak_CAF1 179304 119 - 1 UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40) >DroMoj_CAF1 239255 119 - 1 UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40) >DroAna_CAF1 172326 119 - 1 UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40) >DroPer_CAF1 181560 120 - 1 UCCUAUAUUGGCGAGCUACACAUGCAGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUAUCAACAGCGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((.......)).((((.((((((...(((((.((..((((.........)))).)).)))))..))))))))))..)))).))))).................... ( -32.90) >consensus UCCUAUAUUGGCGAGCUACA_AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU (((((....((((.((.......)).((((.((((((.((((((.....)))..)))..((((..........)))).))))))))))..)))).))))).................... (-30.43 = -30.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:07 2006