Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,410,508 – 6,410,606 |
Length | 98 |
Max. P | 0.518308 |
Location | 6,410,508 – 6,410,606 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -34.02 |
Consensus MFE | -14.27 |
Energy contribution | -15.67 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.26 |
Mean z-score | -2.78 |
Structure conservation index | 0.42 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6410508 98 - 27905053 CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG--CUAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---CCCACG-C--GCCUUCCCAGUUCAUCUCAC .....................(.((((.(((..(((((((--...((((.---------((((((....)))))).)))-)..---.)))))-.--))..))))))).)....... ( -33.90) >DroSec_CAF1 174319 98 - 1 CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG--CCAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---CCCACG-C--GCCUUCCCAGUUCAUCUCAC .....................(.((((.(((..(((((((--...((((.---------((((((....)))))).)))-)..---.)))))-.--))..))))))).)....... ( -33.90) >DroSim_CAF1 198408 98 - 1 CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG--CGAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---CCCACG-C--GCCUUCCCAGUUCAUCUCAC .....................(.((((.(((..(((((((--.(.((((.---------((((((....)))))).)))-).)---.)))))-.--))..))))))).)....... ( -33.90) >DroEre_CAF1 185593 98 - 1 CAUAAAUAUAAGUUCCGAAAAGCACUGCGGACAGCCGUGG--CCAGGGCC---------GAAGUGACUACACUUUUGCC-UGC---CCCGCG-C--GCCUUCCCAGUUCAUCUCAC .....................(.((((.(((..(((((((--...((((.---------((((((....)))))).)))-)..---.)))))-.--))..))))))).)....... ( -33.50) >DroYak_CAF1 178484 98 - 1 CAUAAAUAUAGGUUCCGAAAAGCACUGAGGACAGCCGCGG--CCAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---GCCGCG-C--GCCUUCCCAGUUCAUCUCAC .....................(.((((.(((..(((((((--(((((.(.---------((((((....)))))).)))-)).---))))))-.--))..))))))).)....... ( -38.20) >DroPer_CAF1 180576 105 - 1 CAUAAAUUUAAGUUCCGAAA-----------CAGCUGCGAAUGCAAGGCCACACUAAAGAAAGUCAAUACGACUGUGCUGUGCGCCCGCAUGCCCAGCUGUGUCAGUCUAUCUCAC ................((.(-----------((((((.(.((((..(((((((.((.....((((.....)))).)).)))).))).)))).).))))))).))............ ( -30.70) >consensus CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG__CCAGGGCC_________GAAGUGAGUACACUUUUGCC_UGC___CCCACG_C__GCCUUCCCAGUUCAUCUCAC ................((.....((((.(((..(((((((...((.(((..........((((((....)))))).))).)).....)))))....))..))))))).....)).. (-14.27 = -15.67 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006