Locus 2260

Sequence ID 3R_DroMel_CAF1
Location 6,408,357 – 6,408,453
Length 96
Max. P 0.998578
window3663

overview

Window 3

Location 6,408,357 – 6,408,453
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 89.78
Mean single sequence MFE -27.72
Consensus MFE -25.73
Energy contribution -23.35
Covariance contribution -2.38
Combinations/Pair 1.27
Mean z-score -2.63
Structure conservation index 0.93
SVM decision value 3.15
SVM RNA-class probability 0.998578
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6408357 96 + 27905053
GAAUCGGUUCGACUAUAGUCUAAGUAUACAAAUGACUGCCCAUAUAGCUGAAGAACUGCGAUCGACUGUU-CGCAGUUCGAUUUAAGUACAUUUUUU
(((((..((((.(((((.....(((.........))).....))))).))))(((((((((........)-)))))))))))))............. ( -25.30)
>DroPse_CAF1 170907 93 + 1
GAAUCGGCUCGACUAUAGUCUAAGUAUACAAAUGACUGCCCAUAUAGCUGAGGGGCUGCUCUCUACUGAGAGGCAGCCCGAUUUAAGUACAUU----
(((((..((((.(((((.....(((.........))).....))))).))))(((((((((((....)))).)))))))))))).........---- ( -33.10)
>DroSec_CAF1 172132 94 + 1
GAAUCGGUUCAACUAUAGUCUAAGUAUACAAAUGACUGCCCAUAUAGCUGAAGAACUGCGAUCGACUGUU-CGCAGUUCGAUUUAAGUACAUUU--U
(((((..((((.(((((.....(((.........))).....))))).))))(((((((((........)-)))))))))))))..........--. ( -26.00)
>DroEre_CAF1 183379 93 + 1
GAAUCGGUUCGACUAUAG-CUAAGUAUACAAAUGACUGCCCAUAUAGCUGAGGAACUGCGAUCGACUGUU-CGCAGUUCGAUUUAAGUACAUUU--U
(((((..((((.(((((.-...(((.........))).....))))).))))(((((((((........)-)))))))))))))..........--. ( -24.40)
>DroYak_CAF1 176260 94 + 1
GAAUCGGUUCGACUAUAGUCUAAGUAUACAAAUGACUGCCCAUAUAGCUGAAGAACUGCGACCGACUGUU-CGCAGUUCGAUUUAAGUACAUUU--C
(((((..((((.(((((.....(((.........))).....))))).))))(((((((((........)-)))))))))))))..........--. ( -24.40)
>DroPer_CAF1 178186 94 + 1
GAAUCGGCUCGACUAUAGUCUAAGUAUACAAAUGACUGCCCAUAUAGCUGAGGGGCUGCUCUCUACUGAGAGGCAGCCCGAUUUAAGUACAUUU---
(((((..((((.(((((.....(((.........))).....))))).))))(((((((((((....)))).))))))))))))..........--- ( -33.10)
>consensus
GAAUCGGUUCGACUAUAGUCUAAGUAUACAAAUGACUGCCCAUAUAGCUGAAGAACUGCGAUCGACUGUU_CGCAGUUCGAUUUAAGUACAUUU__U
(((((..((((.(((((.....(((.........))).....))))).))))(((((((((........).)))))))))))))............. (-25.73 = -23.35 +  -2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:05 2006