Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 910,119 – 910,224 |
Length | 105 |
Max. P | 0.976486 |
Location | 910,119 – 910,224 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 74.19 |
Mean single sequence MFE | -53.22 |
Consensus MFE | -26.75 |
Energy contribution | -26.58 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -2.33 |
Structure conservation index | 0.50 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 910119 105 - 27905053 GCUCAACUUGGCAGCCGCCGCCGCUGCCGCCGG---------CCAGACCUCGUUUGUGCCGUUCAGUUCGGCGGCCACGGCGGUGGCGGCCACGCCCACAUUCCAGCACCUGCC (((......(((.((((((((((((((((((((---------((((((...))))).)))(.......)))))))...))))))))))))...)))........)))....... ( -53.34) >DroVir_CAF1 79250 105 - 1 CCUCGCAGCGGCAGCGGCCGGCGC---------CAAUUUGGGGCCAGCUUCGUUUGUGCCCUUUGGCACGGCGGCGACGUCGGCGACGGCAGCGCCAACAUUCCAGCAACUGCA ....((((..((....((((..((---------(((...((((((((......))).)))))))))).))))((((..((((....))))..)))).........))..)))). ( -51.10) >DroPse_CAF1 83316 105 - 1 CCUCAACCUGGCCGCAGCCGCCGUGGCCGCCGGGAGCCUGGGGCAGACCUCGUUUGUGCCAUUCGGUGCGGC---C------GCGGCGGCGACGCCCACAUUCCAGCAUCUGCA ........(((.((..(((((((((((((((.(((...(((.((((((...)))))).)))))).).)))))---)------))))))))..)).))).......((....)). ( -56.20) >DroSim_CAF1 4308 105 - 1 GCUCAACUUGGCAGCCGCCGCCGCUGCUGCCGG---------CCAGACCUCGUUUGUGCCGUUCAGUUCGGCGGCCACGGCGGUGGCGGCCACGCCCACAUUCCAGCACCUGCC (((......(((.((((((((((((((((((((---------((((((...))))).)))(.......)))))))...))))))))))))...)))........)))....... ( -51.14) >DroYak_CAF1 12161 105 - 1 GCUCAACUUGGCAGCCGCCGCCGCUGCCGCCGG---------ACAGACCUCGUUUGUGCCGUUCAACUCGGCGGCCACGGCGGUGGCGGCCACGCCCACAUUCCAGCACCUGCC (((......(((.(((((((((((((..(((..---------((((((...))))))((((.......)))))))..)))))))))))))...)))........)))....... ( -51.44) >DroPer_CAF1 83274 105 - 1 CCUCAACCUGGCCGCUGCCGCCGUGGCCGCCGGGAGCCUGGGGCAGACCUCGUUUGUGCCAUUCGGUGCGGC---C------GCGGCGGCGACGCCCACAUUCCAGCAUCUGCA ........(((.((.((((((((((((((((.(((...(((.((((((...)))))).)))))).).)))))---)------))))))))).)).))).......((....)). ( -56.10) >consensus CCUCAACUUGGCAGCCGCCGCCGCUGCCGCCGG_________GCAGACCUCGUUUGUGCCGUUCAGUUCGGCGGCCACGGCGGCGGCGGCCACGCCCACAUUCCAGCACCUGCA .........(((.(..((((((((..................((((((...))))))(((.........)))..........))))))))..)))).........((....)). (-26.75 = -26.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:10 2006