| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,403,161 – 6,403,254 |
| Length | 93 |
| Max. P | 0.718104 |
| Location | 6,403,161 – 6,403,254 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.58 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -17.66 |
| Energy contribution | -18.70 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6403161 93 - 27905053 ------GGGGG---UUC-GGCUUUAUGCCUGAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGGAUUUUUCUU-UAUCCCCA----CAU----- ------(((((---(((-(((....((((.....)))).)))))))...(((...((((((....((.....))..))))))......))).-...)))).----...----- ( -29.40) >DroVir_CAF1 185179 92 - 1 GCCCAUUGG-G-------GGCUUUAUGCCUCAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGACUUUUCUCUCUCA----U----UCU----- (((((((((-(-------(.(.....)))))))))).))((.((((((((.....))))))))..)).............................----.----...----- ( -25.70) >DroGri_CAF1 212445 101 - 1 GCGCAUUGG-G-------GGCUUUAUGCCUCAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGACUUUUCCAUCUAUCUCAC----UCUGCCGC ((((....(-(-------(((.....)))))....))))((.(((....(((((((((.(((...((.....)).......)))....)))).)))))..)----)).))... ( -29.80) >DroEre_CAF1 178151 99 - 1 GGGAGUUGGGG---CUC-GGCUUCAUGCCUGAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGGAUUUUUCCU-UAUCCCCA----CAU----- ....((.((((---(((-(((....((((.....)))).)))))))....(((((.(((((....((.....))..)))))(((....))))-))))))))----)..----- ( -34.00) >DroYak_CAF1 170989 102 - 1 GGGAGUUGGGGGCGUUC-GGCUUUAUGCCUGAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGGAUUUUUCUU-UAUCCCCA----CAU----- ....((.(((((.((((-(((....((((.....)))).)))))))...(((...((((((....((.....))..))))))......))).-..))))))----)..----- ( -30.80) >DroAna_CAF1 164849 100 - 1 ------GGGGG-CCUCCAGCCUUCAUGCCUGAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGGCUUUUUCCU-UAUCCCCGCACAUAU----- ------(((((-......(((((((....)))).)))..(((((((((((.....))))))))..((.....)).......)))........-..)))))........----- ( -29.20) >consensus G_G__UUGGGG___UUC_GGCUUUAUGCCUGAAUGGCGCGCCGAGCAUUAGAUAAUGGUGUUCCUGCUUAUUGCUUACAUUGGAUUUUUCCU_UAUCCCCA____CAU_____ .......((((.......(((....((((.....)))).)))((((((((.....))))))))..((.....))......................))))............. (-17.66 = -18.70 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:00 2006