Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,401,441 – 6,401,537 |
Length | 96 |
Max. P | 0.724165 |
Location | 6,401,441 – 6,401,537 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -23.74 |
Consensus MFE | -17.54 |
Energy contribution | -17.54 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.74 |
Structure conservation index | 0.74 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6401441 96 + 27905053 ------GCAGCAACAACUAAGCUGACAGCAAGUUAUGAUACUUUAUAAGUUGCAGCAUUAGCAGCAUCUUGAAUACCAGCAGAACUAGAAUUAUUAAAGACA ------..............((((...((((.((((((....)))))).)))).((....))..............))))...................... ( -17.30) >DroSec_CAF1 165250 96 + 1 ------GCAGCAGCAACUAAGCUGACAGCAAGUUAUGAUACUUUAUAAGUUGCAGCAUUAGCAGCAUCUUGGCUACCAGCAGAACUAGAAUUAUUAAAGACA ------((.(((((......)))).).((((.((((((....)))))).)))).))....(((((......)))....))...................... ( -20.10) >DroSim_CAF1 189059 96 + 1 ------GCAGCAGCAACUAAGCUGACAGCAAGUUAUGAUACUUUAUAAGUUGCAGCAUUAGCAGCAUCUUGGCUACCAGCAGAACUAGAAUUAUUAGAGACA ------((.(((((......)))).).((((.((((((....)))))).)))).))....(((((......)))....))...................... ( -20.10) >DroEre_CAF1 176447 96 + 1 ------GCAGCAACAACUAAGCUGCCAGCAAGUUAUGAUACCUUAUAAGCUGCGGCAUUAGCGGCAUCUUCGCUGCCAGCAGCACUAGAAUUGCUAAAGACA ------(((((.........))))).(((((.((((((....))))))(((((((((...((((.....)))))))).))))).......)))))....... ( -31.20) >DroYak_CAF1 169291 102 + 1 GCAGCAGCAGCCACAACUAAGCUGGCAGCAAGUUAUGAUACUUUAUAAGCUGCUGCAUUAGCAGCAUCUUGGCUUCCAGCAGCACUAGAAUUAUUAGAGACA ((.((....)).........(((((.(((((((......))))..((((.((((((....)))))).))))))).))))).))................... ( -30.00) >consensus ______GCAGCAACAACUAAGCUGACAGCAAGUUAUGAUACUUUAUAAGUUGCAGCAUUAGCAGCAUCUUGGCUACCAGCAGAACUAGAAUUAUUAAAGACA ....................((((..((((((((((((....))))))(((((.......)))))..))).)))..))))...................... (-17.54 = -17.54 + -0.00)
Location | 6,401,441 – 6,401,537 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -20.16 |
Energy contribution | -20.20 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -1.73 |
Structure conservation index | 0.77 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6401441 96 - 27905053 UGUCUUUAAUAAUUCUAGUUCUGCUGGUAUUCAAGAUGCUGCUAAUGCUGCAACUUAUAAAGUAUCAUAACUUGCUGUCAGCUUAGUUGUUGCUGC------ .(((((.((((...((((.....)))))))).)))))((.((....)).)).........((((..((((((.((.....))..))))))))))..------ ( -18.80) >DroSec_CAF1 165250 96 - 1 UGUCUUUAAUAAUUCUAGUUCUGCUGGUAGCCAAGAUGCUGCUAAUGCUGCAACUUAUAAAGUAUCAUAACUUGCUGUCAGCUUAGUUGCUGCUGC------ ...............((((.((((((..(((.(((.(((.((....)).))).)))...((((......)))))))..))))..))..))))....------ ( -22.10) >DroSim_CAF1 189059 96 - 1 UGUCUCUAAUAAUUCUAGUUCUGCUGGUAGCCAAGAUGCUGCUAAUGCUGCAACUUAUAAAGUAUCAUAACUUGCUGUCAGCUUAGUUGCUGCUGC------ ...............((((.((((((..(((.(((.(((.((....)).))).)))...((((......)))))))..))))..))..))))....------ ( -22.10) >DroEre_CAF1 176447 96 - 1 UGUCUUUAGCAAUUCUAGUGCUGCUGGCAGCGAAGAUGCCGCUAAUGCCGCAGCUUAUAAGGUAUCAUAACUUGCUGGCAGCUUAGUUGUUGCUGC------ ......(((((((.((((.(((((..((((....((((((......((....))......)))))).....))))..)))))))))..))))))).------ ( -37.30) >DroYak_CAF1 169291 102 - 1 UGUCUCUAAUAAUUCUAGUGCUGCUGGAAGCCAAGAUGCUGCUAAUGCAGCAGCUUAUAAAGUAUCAUAACUUGCUGCCAGCUUAGUUGUGGCUGCUGCUGC .............(((((.....)))))(((.(((.((((((....)))))).)))....((((((((((((.((.....))..)))))))).))))))).. ( -31.20) >consensus UGUCUUUAAUAAUUCUAGUUCUGCUGGUAGCCAAGAUGCUGCUAAUGCUGCAACUUAUAAAGUAUCAUAACUUGCUGUCAGCUUAGUUGUUGCUGC______ ......................(((((((((.(((.(((.((....)).))).)))...((((......))))))))))))).((((....))))....... (-20.16 = -20.20 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:59 2006