Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,399,747 – 6,399,848 |
Length | 101 |
Max. P | 0.528342 |
Location | 6,399,747 – 6,399,848 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -19.10 |
Consensus MFE | -12.90 |
Energy contribution | -12.52 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.09 |
Mean z-score | -1.11 |
Structure conservation index | 0.68 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6399747 101 + 27905053 GCAUUUGUAUUUCACU-UUU---UGCUGCACCCCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGCGCGGG--- ................-...---..((((.((.....((((((((..(((((.....(((((....)))))..)))))....)))))))).......)).)))).--- ( -18.40) >DroVir_CAF1 181392 85 + 1 -----------------------UGUGCCCGGUCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGCCUGAGCCC -----------------------...(((.((((...((((((((..(((((.....(((((....)))))..)))))....)))))))).).))).)))........ ( -17.30) >DroPse_CAF1 162409 96 + 1 CCCUC--CG--CCUCC-AUC---UGCGUCCCGUCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGCGAUG---- .....--..--.....-...---..(((((((.....((((((((..(((((.....(((((....)))))..)))))....))))))))......))).))))---- ( -18.20) >DroGri_CAF1 207961 89 + 1 UU------------UU-UUGUGUUGUGCCCGGCCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGGCU------ ..------------..-.........((((((.....((((((((..(((((.....(((((....)))))..)))))....)))))))).....)))))).------ ( -21.90) >DroWil_CAF1 261125 97 + 1 GCCUC--UG--CCUCAGCUC---UACCCCAGGUCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGCCUGG---- .....--..--.........---....(((((((...((((((((..(((((.....(((((....)))))..)))))....)))))))).......)))))))---- ( -20.60) >DroPer_CAF1 169653 96 + 1 GCCUC--CG--CCUCC-AUC---UGCGUCCCGUCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGCGAUG---- .....--..--.....-...---..(((((((.....((((((((..(((((.....(((((....)))))..)))))....))))))))......))).))))---- ( -18.20) >consensus GCCUC___G__CCUCC_AUC___UGCGCCCCGUCUCUGAUGAUUUUUGAAUUGAUUUGUGUUGUUAAAUAUUAAAUUCUUAUAAGUCAUUUGCACUCGGCCUGG____ ..............................((((...((((((((..(((((.....(((((....)))))..)))))....)))))))).......))))....... (-12.90 = -12.52 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:58 2006