Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,390,116 – 6,390,227 |
Length | 111 |
Max. P | 0.973031 |
Location | 6,390,116 – 6,390,227 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.63 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -13.52 |
Energy contribution | -16.27 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.20 |
Mean z-score | -2.78 |
Structure conservation index | 0.47 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6390116 111 - 27905053 -CACUAAGCUAUUUCUCAAAACAGCAAUUAAGUUUUUGGUAGACUACAUGGUCACACUGGGC-UUUUUCGCACUUAACAGUGUGCCCAUGAUAGAAUAUCAAGCAAAAGAAAA -......(((.(((....))).))).........(((((((..((((((((.(((((((.((-......))......))))))).))))).)))..))))))).......... ( -28.90) >DroSim_CAF1 177457 101 - 1 -CUUGGAGCUAUUUCUCAAAACAGCAAAUAUGUUUUUGGUAGA-----------CACUGGGUCUUUUUCGCACUUAAAAGUGUGCCCAUGUUAGAAUAUUAGGCAAAACAAAA -......(((....((.((((((.......)))))).))..((-----------((.(((((.......(((((....)))))))))))))).........)))......... ( -19.21) >DroEre_CAF1 165088 112 - 1 AUUCUGAAGUAUUUCCCACAAAAGCAAUCAUGCUUUUGAUACACUGCAUGGUCACACUGGGC-CCUUUCGGUGUUAGCAGUGUGGCCAUGAUAGAAUAUUAAGCAAAACGAAA ((((((............((((((((....))))))))........((((((((((((((((-((....)).)))..))))))))))))).))))))................ ( -37.40) >DroYak_CAF1 157308 112 - 1 ACUCUGAAGUAUUUCUCCCAAGAGCAACCAUGAUUUUGAUAGACUGCAUGGUCACACUGGGC-UCCUUCGCUGCUAACAGUGUGACCAUAAUACAAUAAAAAGCAAAAGCAAA ........((((((((..(((((.((....)).)))))..)))....(((((((((((((((-.........)))..)))))))))))))))))........((....))... ( -29.80) >consensus _CUCUGAACUAUUUCUCAAAACAGCAAUCAUGUUUUUGAUAGACUGCAUGGUCACACUGGGC_UCUUUCGCACUUAACAGUGUGCCCAUGAUAGAAUAUUAAGCAAAACAAAA ..................................(((((((.....(((((((((((((..................)))))))))))))......))))))).......... (-13.52 = -16.27 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:53 2006