Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,386,144 – 6,386,237 |
Length | 93 |
Max. P | 0.817004 |
Location | 6,386,144 – 6,386,237 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -19.13 |
Consensus MFE | -12.19 |
Energy contribution | -12.56 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.64 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6386144 93 + 27905053 CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAAAAAAUAU-- ....((--((....((.(((((((((((..(((....))).))))))))))).))......))))..............................-- ( -18.20) >DroVir_CAF1 161565 95 + 1 CUGUGUUUAAAAAUUUAAUUUGUCUACAAAGUAACUCGACGUGUAGAUAAAUCAAUCAAGAUGGCGCGUCGUGCCAACCGAAAAAAAA-CUACAAC- .(((((((.........(((((((((((..((......)).))))))))))).........((((((...)))))).........)))-).)))..- ( -20.70) >DroGri_CAF1 191720 93 + 1 CUAUGC--CAAAUUUUAAUUUGUCUACAAAGUAACUCGACGUGUCGAUAAAUCAAUCAAAAUGGCGCGUCGUGCCAGCGCAAAA-AGC-CAACAACA ...(((--..........((((....))))((..(.((((((((((((......))).....))))))))).)...)))))...-...-........ ( -17.00) >DroSec_CAF1 150143 92 + 1 CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAC-GUAUAA-- .(((((--.........(((((((((((..(((....))).))))))))))).........(((((.(....).)).)))........-))))).-- ( -19.70) >DroEre_CAF1 161260 88 + 1 CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGGCCGUACAAAAA-G-A----- ......--.........(((((((((((..(((....))).)))))))))))........(((((.((......))))))).......-.-.----- ( -20.90) >DroYak_CAF1 153276 89 + 1 CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCAUACAGAGA-GUA----- ...(((--(........(((((((((((..(((....))).)))))))))))........((((((.(....).)).)))).....).-)))----- ( -18.30) >consensus CUAUGC__CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCAAACAAAAA_GUA_AA__ ....((........((.(((((((((((..(((....))).))))))))))).))........))................................ (-12.19 = -12.56 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:50 2006